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Cited by 3Protein Structure and DynamicsAdvanced Physical and Chemical Molecular InteractionsRNA and protein synthesis mechanisms

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Description of conformational ensembles of disordered proteins by residue-local probabilities

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Bastida, Adolfo, Zúñiga, José, Miguel, Beatriz, Soler, Miguel A.·2023·Physical Chemistry Chemical Physics
DOI 10.1039/d2cp05970c

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Abstract

Neighbour-dependent probability expressions describe accurately the conformational ensembles of disordered proteins from short MD trajectories.

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Metadata

Authors
Bastida, A., Zúñiga, J., Miguel, B., & Soler, M. A.
Affiliations
  • Universidad de Murcia (ES)
  • Universidad Politécnica de Cartagena (ES)
  • University of Udine (IT)
Corresponding author
  • Bastida, Adolfo
  • Soler, Miguel A.
ORCID
Venue
Physical Chemistry Chemical Physics
Publisher
Royal Society of Chemistry (RSC)
Published
2023
Volume
25
Issue
15
Pages
10512-10524
ISSN
  • 1463-9076 (ISSN-L)
  • 1463-9084
DOI
10.1039/d2cp05970c
OpenAlex
W4327657215
Cited by
3
References
2
Citations by year
2026: 1 · 2025: 1 · 2024: 1
FWCI
0.27
Type
journal article
Language
en
Open access
Licence
Locations
  • Physical Chemistry Chemical Physics (publishedVersion, cc-by)
  • ChemRxiv (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • Digital Repository (Polytechnic University of Cartagena) (submittedVersion, cc-by)
  • Institutional Research Information System (University of Udine) (submittedVersion)
  • ARCA (Università Ca' Foscari Venezia) (submittedVersion, cc-by)
Funders
Fundación Séneca (20789/PI/18)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
  • Physical Sciences › Chemistry › Physical and Theoretical Chemistry › Advanced Physical and Chemical Molecular Interactions
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
Keywords
intrinsically disordered regions, conformational ensembles, conformational dynamics, finite-temperature molecular dynamics, nearest-neighbor effects, molecular recognition features, p53, conformational space
MeSH terms
Amino Acids, Probability, Protein Conformation, Molecular Dynamics Simulation, Intrinsically Disordered Proteins

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