Cited by 107Cancer, Hypoxia, and MetabolismErythropoietin and Anemia TreatmentKruppel-like factors research

Endogenous 2-oxoacids differentially regulate expression of oxygen sensors

Open access
DALGARD, Clifton Lee, LU, Huasheng, MOHYELDIN, Ahmed, VERMA, Ajay·2004·Biochemical Journal

Abstract

Adaptations to change in oxygen availability are crucial for survival of multi-cellular organisms and are also implicated in several disease states. Such adaptations rely upon gene expression regulated by the heterodimeric transcription factors HIFs (hypoxia-inducible factors). Enzymes that link changes in oxygen tensions with the stability and transcriptional activity of HIFs are considered as oxygen sensors. These enzymes are oxygen-, iron- and 2-oxoglutarate-dependent dioxygenases that hydroxylate key proline and asparagine residues in HIFα subunits. The constitutive inhibitory action of these enzymes on HIFs is relieved by hypoxia and by agents that displace iron or 2-oxoglutarate. Two of the enzymes, HPH (HIF prolyl hydroxylase)-1 and HPH-2, are known to be inducible by hypoxia in a HIF-dependent manner. This suggests the existence of a novel feedback loop for adjusting hypoxia-regulated gene expression. We have recently shown that HIF-1α stability, HIF-1 nuclear translocation and HIF-mediated gene expression in human glioma cell lines can be stimulated by pyruvate independently of hypoxia. In the present study we show that the endogenous 2-oxoacid oxaloacetate can also activate HIF-mediated gene expression. Pyruvate and oxaloacetate treatment of cells also up-regulates HPH-1 and HPH-2, but not HPH-3 or the HIF asparaginyl hydroxylase FIH-1 (factor inhibiting HIF). Regulation of HIF-1 and the expression of HPH homologue genes can thus be influenced by specific glycolytic and tricarboxylic acid cycle metabolites. These findings may underlie important interactions between oxygen homoeostasis, glycolysis, the tricarboxylic acid cycle and gluconeogenesis.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1042/bj20031647

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The HIF hydroxylases have been reported to be inhibited by citrate, isocitrate, succinate, fumarate, malate, oxaloacetate, and pyruvate.

    “In addition to requiring 2-oxoglutarate as a cosubstrate, the HIF hydroxylases have been reported to be inhibited by citrate, isocitrate, succinate, fumarate, malate, oxaloacetate, and pyruvate (Dalgard et al., 2004; Hewitson et al., 2007; Isaacs et al., 2005; Koivunen et al., 2007a; Selak et al., 2005).”

    From Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway. (2008) · cites this paper as Dalgard et al., 2004

    The Introduction (page unavailable) says HIF hydroxylases require 2-oxoglutarate. The Discussion (page unavailable) proposes that pyruvate and oxaloacetate may antagonize these enzymes, but says only nitric oxide had been shown to inhibit HIF prolyl hydroxylases directly. This paper does not report hydroxylase inhibition by citrate, isocitrate, succinate, fumarate, or malate. (LLM, conf=0.87)

    Experimental — accuracy not yet measured
  • Other metabolites such as pyruvate and oxaloacetate can stabilize HIF1a.

    “there is evidence to show that other metabolites, such as pyruvate and oxaloacetate, can stabilize HIF1a (38).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

The citation lists haven’t been fetched yet

References 33 · Cited by 107

Authors
DALGARD, C. L., LU, H., MOHYELDIN, A., & VERMA, A.
Affiliations
Uniformed Services University of the Health Sciences (US)
Venue
Biochemical Journal
Published
2004-06-01
Volume
380
Issue
2
Pages
419-424
ISSN
  • 0264-6021 (ISSN-L)
  • 1470-8728
OpenAlex
W2068414886
Cited by
107
References
33
Citations by year
2022: 1 · 2021: 4 · 2020: 3 · 2019: 1 · 2018: 2 · 2017: 1 · 2016: 2 · 2015: 2 · 2014: 3 · 2013: 4 · 2012: 7
FWCI
5.24
Type
journal article
Language
en
Open access
Locations
  • Biochemical Journal (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • National Institutes of Health
  • National Institute of Neurological Disorders and Stroke (NS37814, R01NS037814)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
  • Health Sciences › Medicine › Hematology › Erythropoietin and Anemia Treatment
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Kruppel-like factors research
Keywords
oxaloacetate, pyruvate, hypoxia-inducible factor, HIF prolyl hydroxylase, HIF-1α stability, oxygen sensing, 2-oxoglutarate-dependent dioxygenase, FIH-1, glycolysis, TCA cycle, gluconeogenesis, oxygen homeostasis, glioma cells
MeSH terms
Hypoxia, Citric Acid Cycle, DNA-Binding Proteins, Gene Expression Regulation, Glioblastoma, Glycolysis, Humans, Mixed Function Oxygenases, Keto Acids, Nuclear Proteins, Oxygen, Transcription Factors, Central Nervous System Neoplasms, Pyruvic Acid, Cell Line, Tumor, Hypoxia-Inducible Factor 1, Hypoxia-Inducible Factor 1, alpha Subunit, Oxaloacetic Acid

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review