The DOI matches its Crossref record; 39 of the 39 references it cites were found in a registry or an index.
Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
Abstract
Analyses of small subunit ribosomal RNA genes (SSU rDNAs) have significantly influenced our understanding of the composition of aquatic microbial assemblages. Unfortunately, SSU rDNA sequences often do not have sufficient resolving power to differentiate closely related species. To address this general problem for uncultivated bacterioplankton taxa, we analysed and compared sequences of polymerase chain reaction (PCR)-generated and bacterial artificial chromosome (BAC)-derived clones that contained most of the SSU rDNAs, the internal transcribed spacer (ITS) and the large subunit ribosomal RNA gene (LSU rDNA). The phylogenetic representation in the rRNA operon PCR library was similar to that reported previously in coastal bacterioplankton SSU rDNA libraries. We observed good concordance between the phylogenetic relationships among coastal bacterioplankton inferred from SSU or LSU rDNA sequences. ITS sequences confirmed the close intragroup relationships among members of the SAR11, SAR116 and SAR86 clades that were predicted by SSU and LSU rDNA sequence analyses. We also found strong support for homologous recombination between the ITS regions of operons from the SAR11 clade.
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“They have been identified as crucial communities in the marine environment and have been found in various ecosystems ranging from marine sediments and surface seawaters to polar and coastal marine ecosystems (Suzuki et al., 2001; Cho et al., 2007; Gómez-Pereira et al., 2010; Orsi et al., 2016).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris : possible influence of the rearing water and more (2021) · cites this paper as Suzuki et al., 2001
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The Uncultured Microbial Majority
Rappé, M. S., & Giovannoni, S. J. (2003) · Annual Review of Microbiology · doi:10.1146/annurev.micro.57.030502.090759 · Cited by 2,017
The ecology of Cytophaga–Flavobacteria in aquatic environments
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Metagenomics: Genomic Analysis of Microbial Communities
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Metadata
- Authors
- Suzuki, M. T., Béjà, O., Taylor, L. T., & DeLong, E. F.
- Affiliations
- Monterey Bay Aquarium Research Institute (US)
- Corresponding author
- DeLong, Edward F.
- Venue
- Environmental Microbiology
- Publisher
- Wiley
- Published
- 2001-05
- Volume
- 3
- Issue
- 5
- Pages
- 323-331
- ISSN
- 1462-2912 (ISSN-L)
- 1462-2920
- OpenAlex
- W2170844353
- Cited by
- 167
- References
- 39
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 2 · 2023: 3 · 2022: 5 · 2021: 11 · 2020: 7 · 2019: 5 · 2018: 4 · 2017: 6 · 2016: 3 · 2015: 4 · 2014: 7 · 2013: 8 · 2012: 4
- FWCI
- 10.57
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Environmental Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation
- David and Lucile Packard Foundation
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
- Keywords
- rRNA operons, small subunit rRNA gene, 28S rDNA, ITS region, uncultured bacteria, SAR11 clade, homologous recombination, phylogenetic relationships, bacterial diversity
- MeSH terms
- Bacteria, Base Sequence, Cloning, Molecular, DNA, Ribosomal, Marine Biology, Molecular Sequence Data, Operon, Phylogeny, RNA, Ribosomal, RNA, Transfer, Water Microbiology
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