Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior
Abstract
A biological introduction serves to remind us that differentiation is an epigenetic process, that multistationarity can account for epigenetic differences, including those involved in cell differentiation, and that positive feedback circuits are a necessary condition for multistationarity and, by inference, for differentiation. The core of the paper is comprised of a formal description of feedback circuits and unions of disjoint circuits. We introduce the concepts of full-circuit (a circuit or union of disjoint circuits which involves all the variables of the system), and of ambiguous circuit (a circuit whose sign depends on the location in phase space). We describe the partition of phase space (a) according to the signs of the ambiguous circuits, and (b) according to the signs of the eigenvalues or their real part. We introduce a normalization of the system versus one of the circuits; in two variables, this permits an entirely general description in terms of a common diagram in the "circuit space." The paper ends with general statements concerning the requirements for multistationarity, stable periodicity, and deterministic chaos. (c) 2001 American Institute of Physics.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Evidence of dysregulated B cell and NK cell function has been reported in ME/CFS.
“Since evidence of dysregulated B cell14 and NK cell function39 has been reported in ME/CFS, these cell populations were also included in the model.”
From Leveraging Prior Knowledge of Endocrine Immune Regulation in the Therapeutically-relevant Phenotyping of Women with Chronic Fatigue Syndrome (2019) · cites this paper as [39]
Cites
ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON
Novick, A., & Weiner, M. (1957) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.43.7.553 · Cited by 891 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
Tyson, J. J., Chen, K. C., & Novak, B. (2003) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(03)00017-6 · Cited by 1,583 · see citing works
Palma, A., Jarrah, A. S., Tieri, P., Cesareni, G., & Castiglione, F. (2018) · Frontiers in Physiology · doi:10.3389/fphys.2018.01659 · Cited by 122 · see citing works
Inverse problems in systems biology
Engl, H. W., Flamm, C., Kügler, P., Lu, J., Müller, S., & Schuster, P. (2009) · Inverse Problems · doi:10.1088/0266-5611/25/12/123014 · Cited by 122 · see citing works
Morris, M. C., Cooney, K. E., Sedghamiz, H., Abreu, M., Collado, F., Balbin, E. G., Craddock, T. J. A., Klimas, N. G., Broderick, G., & Fletcher, M. A. (2019) · Clinical Therapeutics · doi:10.1016/j.clinthera.2019.03.002 · Cited by 14 · see citing works
- Authors
- Thomas, R., & Kaufman, M.
- Affiliations
- Université Libre de Bruxelles (BE)
- Venue
- Chaos: An Interdisciplinary Journal of Nonlinear Science
- Publisher
- AIP Publishing
- Published
- 2001-03-01
- Volume
- 11
- Issue
- 1
- Pages
- 170-179
- ISSN
- 1054-1500 (ISSN-L)
- 1089-7682
- OpenAlex
- W1979230873
- Cited by
- 276
- References
- 1
- Citations by year
- 2026: 3 · 2025: 5 · 2024: 3 · 2023: 11 · 2022: 7 · 2021: 4 · 2020: 9 · 2019: 11 · 2018: 20 · 2017: 14 · 2016: 14 · 2015: 4 · 2014: 9 · 2013: 9 · 2012: 12
- FWCI
- 2.31
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Chaos An Interdisciplinary Journal of Nonlinear Science (publishedVersion)
- PubMed (publishedVersion)
- Dépôt institutionnel de l'Université libre de Bruxelles (Université Libre de Bruxelles) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Physical Sciences › Mathematics › Geometry and Topology › Advanced Differential Equations and Dynamical Systems
- Physical Sciences › Computer Science › Computer Networks and Communications › Nonlinear Dynamics and Pattern Formation
- Keywords
- multistationarity, cell differentiation, epigenetic memory, positive feedback loop, phase space partition, deterministic chaos
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review