The DOI matches its Crossref record; 47 of the 49 references it cites were found in a registry or an index.
The fundamental role of quantized vibrations in coherent light harvesting by cryptophyte algae
Open accessAbstract
The influence of fast vibrations on energy transfer and conversion in natural molecular aggregates is an issue of central interest. This article shows the important role of high-energy quantized vibrations and their non-equilibrium dynamics for energy transfer in photosynthetic systems with highly localized excitonic states. We consider the cryptophyte antennae protein phycoerythrin 545 and show that coupling to quantized vibrations, which are quasi-resonant with excitonic transitions is fundamental for biological function as it generates non-cascaded transport with rapid and wider spatial distribution of excitation energy. Our work also indicates that the non-equilibrium dynamics of such vibrations can manifest itself in ultrafast beating of both excitonic populations and coherences at room temperature, with time scales in agreement with those reported in experiments. Moreover, we show that mechanisms supporting coherent excitonic dynamics assist coupling to selected modes that channel energy to preferential sites in the complex. We therefore argue that, in the presence of strong coupling between electronic excitations and quantized vibrations, a concrete and important advantage of quantum coherent dynamics is precisely to tune resonances that promote fast and effective energy distribution.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The environmental spectral densities [25] describing their interaction with the system tend to display two principal structures, a broad smooth background which has a short memory time and interacts with the system mainly through its fluctuations, i.e. causing noise, and well defined narrow features corresponding, for example, to long-lived vibrational motion that can lead to quasi-coherent Dynami”
From Vibrations, quanta and biology (2013) · cites this paper as [25]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
10th Spiers Memorial Lecture. Transfer mechanisms of electronic excitation
Förster, T. (1959) · Discussions of the Faraday Society · doi:10.1039/df9592700007 · Cited by 3,375
Lessons from nature about solar light harvesting
Scholes, G. D., Fleming, G. R., Olaya-Castro, A., & van Grondelle, R. (2011) · Nature Chemistry · doi:10.1038/nchem.1145 · Cited by 1,915
Self-citationDavydov, A. S., & Kaplan, H. (1963) · American Journal of Physics · doi:10.1119/1.1969397 · Cited by 1,809
Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature
Collini, E., Wong, C. Y., Wilk, K. E., Curmi, P. M. G., Brumer, P., & Scholes, G. D. (2010) · Nature · doi:10.1038/nature08811 · Cited by 1,649
Self-citationEffect of friction on electron transfer in biomolecules
Garg, A., Onuchic, J. N., & Ambegaokar, V. (1985) · The Journal of Chemical Physics · doi:10.1063/1.449017 · Cited by 744
Ishizaki, A., & Fleming, G. R. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3155372 · Cited by 734
Charge and Energy Transfer Dynamics in Molecular Systems
May, V., & Kühn, O. (2003) · doi:10.1002/9783527602575 · Cited by 531
Variational calculation of the dynamics of a two level system interacting with a bath
Silbey, R., & Harris, R. A. (1984) · The Journal of Chemical Physics · doi:10.1063/1.447055 · Cited by 469
Ultrafast excitation energy transfer dynamics in photosynthetic pigment–protein complexes
Renger, T., May, V., & Kühn, O. (2001) · Physics Reports · doi:10.1016/s0370-1573(00)00078-8 · Cited by 413
Fluctuation Theorem for Arbitrary Open Quantum Systems
Campisi, M., Peter Talkner, A., & Peter Hänggi, A. (2009) · Physical Review Letters · doi:10.1103/physrevlett.102.210401 · Cited by 354
Renger, T., & Marcus, R. A. (2002) · The Journal of Chemical Physics · doi:10.1063/1.1470200 · Cited by 349
Good vibrations in enzyme-catalysed reactions
Hay, S., & Scrutton, N. S. (2012) · Nature Chemistry · doi:10.1038/nchem.1223 · Cited by 295
Theory of coherent resonance energy transfer
Jang, S., Cheng, Y., Reichman, D. R., & Eaves, J. D. (2008) · The Journal of Chemical Physics · doi:10.1063/1.2977974 · Cited by 292
Vibronic Enhancement of Exciton Sizes and Energy Transport in Photosynthetic Complexes
Womick, J. M., & Moran, A. M. (2011) · The Journal of Physical Chemistry B · doi:10.1021/jp106713q · Cited by 242
Energy transfer from Förster–Dexter theory to quantum coherent light-harvesting
Olaya-Castro, A., & Scholes, G. D. (2011) · International Reviews in Physical Chemistry · doi:10.1080/0144235x.2010.537060 · Cited by 230
Self-citationCorrelation-Dependent Coherent to Incoherent Transitions in Resonant Energy Transfer Dynamics
Nazir, A. (2009) · Physical Review Letters · doi:10.1103/physrevlett.103.146404 · Cited by 187
Wendling, M., Pullerits, T., Przyjalgowski, M. A., Vulto, S. I. E., Aartsma, T. J., van Grondelle, R., & van Amerongen, H. (2000) · The Journal of Physical Chemistry B · doi:10.1021/jp000077+ · Cited by 185
Turner, D. B., Dinshaw, R., Lee, K., Belsley, M. S., Wilk, K. E., Curmi, P. M. G., & Scholes, G. D. (2012) · Physical Chemistry Chemical Physics · doi:10.1039/c2cp23670b · Cited by 184
Self-citationJankowiak, R., Reppert, M., Zazubovich, V., Pieper, J., & Reinot, T. (2011) · Chemical Reviews · doi:10.1021/cr100234j · Cited by 151
Photosynthetic Light-Harvesting Is Tuned by the Heterogeneous Polarizable Environment of the Protein
Curutchet, C., Kongsted, J., Muñoz‐Losa, A., Hossein-Nejad, H., Scholes, G. D., & Mennucci, B. (2011) · Journal of the American Chemical Society · doi:10.1021/ja110053y · Cited by 144
Self-citationQuantum coherent biomolecular energy transfer with spatially correlated fluctuations
Nalbach, P., Eckel, J., & Thorwart, M. (2010) · New Journal of Physics · doi:10.1088/1367-2630/12/6/065043 · Cited by 143
Quest for Spatially Correlated Fluctuations in the FMO Light-Harvesting Complex
Olbrich, C., Strümpfer, J., Schulten, K. J., & Kleinekathöfer, U. (2010) · The Journal of Physical Chemistry B · doi:10.1021/jp1099514 · Cited by 139
Doust, A. B., Marai, C. N. J., Harrop, S. J., Wilk, K. E., Curmi, P. M. G., & Scholes, G. D. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.09.044 · Cited by 134
Self-citationWilk, K. E., Harrop, S. J., Jankova, L., Edler, D., Keenan, G., Sharples, F., Hiller, R. G., & Curmi, P. M. G. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.16.8901 · Cited by 132
Jang, S. (2011) · The Journal of Chemical Physics · doi:10.1063/1.3608914 · Cited by 124
Kolli, A., Nazir, A., & Olaya-Castro, A. (2011) · The Journal of Chemical Physics · doi:10.1063/1.3652227 · Cited by 124
Self-citationExciton Coherence and Energy Transport in the Light-Harvesting Dimers of Allophycocyanin
Womick, J. M., & Moran, A. M. (2009) · The Journal of Physical Chemistry B · doi:10.1021/jp907644h · Cited by 119
Quantum State Tuning of Energy Transfer in a Correlated Environment
Fassioli, F., Nazir, A., & Olaya-Castro, A. (2010) · The Journal of Physical Chemistry Letters · doi:10.1021/jz100717d · Cited by 105
Self-citationNalbach, P., Ishizaki, A., Fleming, G. R., & Thorwart, M. (2011) · New Journal of Physics · doi:10.1088/1367-2630/13/6/063040 · Cited by 93
Rätsep, M., Pieper, J., Irrgang, K. ‐., & Freiberg, A. (2007) · The Journal of Physical Chemistry B · doi:10.1021/jp075170d · Cited by 91
Quantum State Tuning of Energy Transfer in a Correlated EnvironmentPreprint
Fassioli, F., Nazir, A., & Olaya-castro, R. (2010) · Cited by 91
Ritschel, G., Roden, J., Strunz, W. T., & Eisfeld, A. (2011) · New Journal of Physics · doi:10.1088/1367-2630/13/11/113034 · Cited by 88
Coherent Vibronic Coupling in Light-Harvesting Complexes from Photosynthetic Marine Algae
Richards, G. H., Wilk, K. E., Curmi, P. M. G., Quiney, H. M., & Davis, J. A. (2012) · The Journal of Physical Chemistry Letters · doi:10.1021/jz201600f · Cited by 79
Novoderezhkin, V. I., Doust, A. B., Curutchet, C., Scholes, G. D., & van Grondelle, R. (2010) · Biophysical Journal · doi:10.1016/j.bpj.2010.04.039 · Cited by 78
Self-citationKolli, A., Nazir, A., & Olaya-Castro, A. (2011) · UCL Discovery (University College London) · Cited by 78
Self-citationUNIQUE LOCATION OF THE PHYCOBILIPROTEIN LIGHT‐HARVESTING PIGMENT IN THE CRYPTOPHYCEAE1
Spear‐Bernstein, L., & Miller, K. R. (1989) · Journal of Phycology · doi:10.1111/j.1529-8817.1989.tb00245.x · Cited by 77
Solvent Fluctuations Drive the Hole Transfer in DNA: A Mixed Quantum−Classical Study
Kubař, T., Kleinekathöfer, U., & Elstner, M. (2009) · The Journal of Physical Chemistry B · doi:10.1021/jp9073587 · Cited by 74
Wit, C. D. V. D. W.-D., Doust, A. B., van Stokkum, I. H. M., Dekker, J. P., Wilk, K. E., Curmi, P. M. G., Scholes, G. D., & van Grondelle, R. (2006) · The Journal of Physical Chemistry B · doi:10.1021/jp061546w · Cited by 58
Self-citationThe nature of the low energy band of the Fenna-Matthews-Olson complex: Vibronic signatures
Caycedo-Soler, F., Chin, A. W., Almeida, J., Huelga, S. F., & Plenio, M. B. (2012) · The Journal of Chemical Physics · doi:10.1063/1.3703504 · Cited by 46
Mechanism and Reaction Coordinate of Directional Charge Separation in Bacterial Reaction Centers
Eisenmayer, T. J., de Groot, H. J. M., van de Wetering, E., Neugebauer, J., & Buda, F. (2012) · The Journal of Physical Chemistry Letters · doi:10.1021/jz201695p · Cited by 46
Electronic energy transfer on a vibronically coupled quantum aggregate
Roden, J., Schulz, G. V., Eisfeld, A., & Briggs, J. S. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3176513 · Cited by 45
Reddy, N. R. S., Kolaczkowski, S. V., & Small, G. J. (1993) · Science · doi:10.1126/science.260.5104.68 · Cited by 43
Engineering Directed Excitonic Energy Transfer
Perdomo‐Ortiz, A., Vogt-Maranto, L., Najmaie, A., & Aspuru‐Guzik, A. (2010) · Digital Access to Scholarship at Harvard (DASH) (Harvard University) · Cited by 34
Engineering directed excitonic energy transfer
Perdomo‐Ortiz, A., Vogt, L., Najmaie, A., & Aspuru‐Guzik, A. (2010) · Applied Physics Letters · doi:10.1063/1.3323108 · Cited by 32
Influence of Vibronic Coupling on Band Structure and Exciton Self-Trapping in α-Perylene
West, B. A., Womick, J. M., McNeil, L. E., Tan, K. J., & Moran, A. M. (2010) · The Journal of Physical Chemistry B · doi:10.1021/jp105115n · Cited by 27
Phonon-mediated path-interference in electronic energy transfer
Hossein-Nejad, H., Olaya-Castro, A., & Scholes, G. D. (2012) · The Journal of Chemical Physics · doi:10.1063/1.3675844 · Cited by 26
Self-citationYang, M. (2006) · Journal of Molecular Spectroscopy · doi:10.1016/j.jms.2006.06.004 · Cited by 20
Flagged first, then by citations
2 of the 49 references couldn’t be matched to a known paper.
Research works printed but not linked: 2
- 2000, Photosynthetic Excitons
- A. W. Chin, J. Prior, R. Rosenbach, F. Caycedo-Soler, S. F. Huelga, and M. B. Plenio, e-print: arXiv:1203.0776 (2012). · arXiv
Cited by
Sorted by citations
Colloquium : Quantum coherence as a resource
Streltsov, A., Adesso, G., & Plenio, M. B. (2017) · Reviews of Modern Physics · doi:10.1103/revmodphys.89.041003 · Cited by 1,878
Quantum coherence in photosynthesis for efficient solar-energy conversion
Romero, E., Augulis, R., Novoderezhkin, V. I., Ferretti, M., Thieme, J., Zigmantas, D., & van Grondelle, R. (2014) · Nature Physics · doi:10.1038/nphys3017 · Cited by 594
Vibrations, quanta and biology
Huelga, S. F., & Plenio, M. B. (2013) · Contemporary Physics · doi:10.1080/00405000.2013.829687 · Cited by 568
Quantum design of photosynthesis for bio-inspired solar-energy conversion
Romero, E., Novoderezhkin, V. I., & van Grondelle, R. (2017) · Nature · doi:10.1038/nature22012 · Cited by 436
Nelson, T., White, A. J., Bjorgaard, J. A., Sifain, A. E., Zhang, Y., Nebgen, B. T., Fernández-Alberti, S., Mozyrsky, D., Roitberg, A. E., & Tretiak, S. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.9b00447 · Cited by 453
Metadata
- Authors
- Kolli, A., O’Reilly, E. J., Scholes, G. D., & Olaya-Castro, A.
- Affiliations
- University College London (GB)
- University of Toronto (CA)
- Venue
- The Journal of Chemical Physics
- Publisher
- AIP Publishing
- Published
- 2012-11-06
- Volume
- 137
- Issue
- 17
- Pages
- 174109-174109
- ISSN
- 0021-9606 (ISSN-L)
- 1089-7690
- OpenAlex
- W1991695217
- Cited by
- 219
- References
- 49
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 9 · 2023: 7 · 2022: 13 · 2021: 13 · 2020: 10 · 2019: 17 · 2018: 16 · 2017: 23 · 2016: 28 · 2015: 34 · 2014: 18 · 2013: 20 · 2012: 2
- FWCI
- 12.23
- Type
- journal article
- Language
- en
- Open access
- green
- arxiv.org
- Locations
- The Journal of Chemical Physics (publishedVersion)
- PubMed (publishedVersion)
- arXiv (Cornell University) (submittedVersion)
- UCL Discovery (University College London) (submittedVersion)
- arXiv (Cornell University)
- Funders
- Engineering and Physical Sciences Research Council (EP/G005222/1)
- Topics
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Spectroscopy and Quantum Chemical Studies
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Strong Light-Matter Interactions
- Physical Sciences › Chemistry › Physical and Theoretical Chemistry › Photochemistry and Electron Transfer Studies
- Keywords
- cryptophyte algae, excitonic energy transfer, excitonic coherence, ultrafast exciton dynamics, exciton-vibration coupling, photosynthetic antenna proteins, resonant frequency tuning
- MeSH terms
- Electrons, Energy Transfer, Models, Molecular, Phycoerythrin, Protein Conformation, Quantum Theory, Vibration, Cryptophyta
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
