Identification of slow molecular order parameters for Markov model construction

Cited by (1,004)

Items 201–300 of 1,004

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37. Structure Language Models for Protein Conformation Generation
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38. A quantitative paradigm for water-assisted proton transport through proteins and other confined spaces
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46. Identification and Validation of Reaction Coordinates Describing Protein Functional Motion: Hierarchical Dynamics of T4 Lysozyme
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47. Markov State Models of gene regulatory networks
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48. Efficient maximum likelihood parameterization of continuous-time Markov processes
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53. Performance of Markov State Models and Transition Networks on Characterizing Amyloid Aggregation Pathways from MD Data
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54. Multiscale Reweighted Stochastic Embedding: Deep Learning of Collective Variables for Enhanced Sampling
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58. T7 RNA polymerase translocation is facilitated by a helix opening on the fingers domain that may also prevent backtracking
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64. Machine Learning for Molecular Dynamics on Long Timescales
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