Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 42

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Real-time investigation of dynamic protein crystallization in living cells

Schönherr, R., Klinge, M., Rudolph, J. M., Fita, K., Rehders, D., Lübber, F., Schneegans, S., Majoul, I. V., Duszenko, M., Betzel, C., Brandariz-Nuñez, A., Martinez-Costas, J., Duden, R., Redecke, L.·2015·Structural Dynamics

Abstract

X-ray crystallography requires sufficiently large crystals to obtain structural insights at atomic resolution, routinely obtained in vitro by time-consuming screening. Recently, successful data collection was reported from protein microcrystals grown within living cells using highly brilliant free-electron laser and third-generation synchrotron radiation. Here, we analyzed in vivo crystal growth of firefly luciferase and Green Fluorescent Protein-tagged reovirus μNS by live-cell imaging, showing that dimensions of living cells did not limit crystal size. The crystallization process is highly dynamic and occurs in different cellular compartments. In vivo protein crystallization offers exciting new possibilities for proteins that do not form crystals in vitro.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1063/1.4921591

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Research works printed but not linked: 64

  1. 2007, Observation of decreased radiation damage at higher dose rates in room temperature protein crystallography, Structure, 15, 1531, 10.1016/j.str.2007.10.013 · DOI
  2. 2010, The minimum crystal size needed for a complete diffraction data set, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 393, 10.1107/S0907444910007262 · DOI
  3. 1990, Cryoprotection of protein crystals against radiation damage in electron and X-ray diffraction, Proc. R. Soc. London, Ser. B, 241, 6, 10.1098/rspb.1990.0057 · DOI
  4. 1997, Macromolecular Cryocrystallography, J. Appl. Crystallogr., 30, 211, 10.1107/S0021889897002677 · DOI
  5. 2011, Overcoming barriers to membrane protein structure determination, Nat. Biotechnol., 29, 335, 10.1038/nbt.1833 · DOI
  6. 2014, Introduction to protein crystallization, Acta Crystallogr., Sect. F: Struct. Biol. Commun., 70, 2, 10.1107/S2053230X13033141 · DOI
  7. 2003, Robotics for automated crystal formation and analysis, Methods Enzymol., 368, 45, 10.1016/S0076-6879(03)68004-3 · DOI
  8. 2006, Protein crystallization in vivo, Curr. Opin. Colloid Interface Sci., 11, 40, 10.1016/j.cocis.2005.10.002 · DOI
  9. 1999, Crystallization of Biological Macromolecules
  10. 1980, The structure of cucurbitin: Subunit symmetry and organization in situ, Eur. J. Biochem., 103, 585, 10.1111/j.1432-1033.1980.tb05983.x · DOI
  11. 1998, Deposition of storage proteins, Plant Mol. Biol., 38, 77, 10.1023/A:1006020208380 · DOI
  12. 1998, The role of assembly in insulin's biosynthesis, Curr. Opin. Struct. Biol., 8, 189, 10.1016/S0959-440X(98)80037-7 · DOI
  13. 2003, Peroxisome assembly in yeast, Microsc. Res. Tech., 61, 139, 10.1002/jemt.10323 · DOI
  14. 1989, Insecticidal crystal proteins of Bacillus thuringiensis, Microbiol. Rev., 53, 242, 10.1128/mr.53.2.242-255.1989 · DOI
  15. 1986, Polyhedrin structure, J. Gen. Virol., 67, 1499, 10.1099/0022-1317-67-8-1499 · DOI
  16. 2007, The molecular organization of cypovirus polyhedra, Nature, 446, 97, 10.1038/nature05628 · DOI
  17. 1996, In vivo calcineurin crystals formed using the baculovirus expression system, Microsc. Res. Tech., 34, 77, 10.1002/(SICI)1097-0029(19960501)34:1<77::AID-JEMT11>3.0.CO;2-M · DOI
  18. 2011, In vivo crystallization of human IgG in the endoplasmic reticulum of engineered Chinese hamster ovary (CHO) cells, J. Biol. Chem., 286, 19917, 10.1074/jbc.M110.204362 · DOI
  19. 2014, Modulation of in vivo IgG crystallization in the secretory pathway by heavy chain isotype class switching and N-linked glycosylation, Biochim. Biophys. Acta, 1843, 1325, 10.1016/j.bbamcr.2014.03.024 · DOI
  20. 2014, In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?, Philos. Trans. R. Soc. London, Ser. B: Biol. Sci., 369, 20130497, 10.1098/rstb.2013.0497 · DOI
  21. 2014, In cellulo structure determination of a novel cypovirus polyhedrin, Acta Crystallogr., Sect. D: Biol. Crystallogr., 70, 1435, 10.1107/S1399004714004714 · DOI
  22. 2011, Femtosecond X-ray protein nanocrystallography, Nature, 470, 73, 10.1038/nature09750 · DOI
  23. 2012, High-resolution protein structure determination by serial femtosecond crystallography, Science, 337, 362, 10.1126/science.1217737 · DOI
  24. 2012, CrystFEL: A software suite for snapshot serial crystallography, J. Appl. Crystallogr., 45, 335, 10.1107/S0021889812002312 · DOI
  25. 2014, Cheetah: Software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data, J. Appl. Crystallogr., 47, 1118, 10.1107/S1600576714007626 · DOI
  26. 2011, Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals, Acta Crystallogr., Sect. A: Found. Crystallogr., 67, 131, 10.1107/S0108767310050981 · DOI
  27. 2008, Gas dynamic virtual nozzle for generation of microscopic droplet streams, J. Phys. D: Appl. Phys., 41, 195505, 10.1088/0022-3727/41/19/195505 · DOI
  28. 2014, Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography, Nat. Commun., 5, 3309, 10.1038/ncomms4309 · DOI
  29. 2013, Natively inhibited Trypanosoma brucei cathepsin B structure determined by using an X-ray laser, Science, 339, 227, 10.1126/science.1229663 · DOI · Paper page
  30. 2013, Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature, Science, 340, 491, 10.1126/science.1234273 · DOI
  31. 2013, Anomalous signal from S atoms in protein crystallographic data from an X-ray free-electron laser, Acta Crystallogr., Sect. D: Biol. Crystallogr., 69, 838, 10.1107/S0907444913002448 · DOI
  32. 2014, De novo protein crystal structure determination from X-ray free-electron laser data, Nature, 505, 244, 10.1038/nature12773 · DOI
  33. 2014, Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam, Proc. Natl. Acad. Sci. U.S.A., 111, 12769, 10.1073/pnas.1413456111 · DOI
  34. 2014, Serial crystallography on in vivo grown microcrystals using synchrotron radiation, IUCrJ, 1, 87, 10.1107/S2052252513033939 · DOI
  35. 2009, The atomic structure of baculovirus polyhedra reveals the independent emergence of infectious crystals in DNA and RNA viruses, Proc. Natl. Acad. Sci. U.S.A., 106, 22205, 10.1073/pnas.0910686106 · DOI
  36. 2010, How baculovirus polyhedra fit square pegs into round holes to robustly package viruses, EMBO J., 29, 505, 10.1038/emboj.2009.352 · DOI
  37. 2012, In vivo protein crystallization opens new routes in structural biology, Nat. Methods, 9, 259, 10.1038/nmeth.1859 · DOI
  38. 2010, Versatile molecular tagging method for targeting proteins to avian reovirus muNS inclusions. Use in protein immobilization and purification, PLoS One, 5, e13961, 10.1371/journal.pone.0013961 · DOI
  39. 2010, Avian reovirus NS protein forms homo-oligomeric inclusions in a microtubule-independent fashion, which involves specific regions of its C-terminal domain, J. Virol., 84, 4289, 10.1128/JVI.02534-09 · DOI
  40. 2009, Opposite-polarity motors activate one another to trigger cargo transport in live cells, J. Cell Biol., 187, 1071, 10.1083/jcb.200908075 · DOI
  41. 2011, Reticulon short hairpin transmembrane domains are used to shape ER tubules, Traffic, 12, 28, 10.1111/j.1600-0854.2010.01134.x · DOI
  42. 1987, A modular detector for flow cytometric multicolor fluorescence measurements, Cytometry, 8, 353, 10.1002/cyto.990080403 · DOI
  43. 2013, Fast structural responses of gap junction membrane domains to AB5 toxins, Proc. Natl. Acad. Sci. U.S.A., 110, E4125, 10.1073/pnas.1315850110 · DOI
  44. 1991, Membrane-permeable luciferin esters for assay of firefly luciferase in live intact cells, Biochem. J., 276, 637, 10.1042/bj2760637 · DOI
  45. 2001, KDEL-cargo regulates interactions between proteins involved in COPI vesicle traffic: Measurements in living cells using FRET, Dev. Cell, 1, 139, 10.1016/S1534-5807(01)00004-1 · DOI
  46. 2000, Avian reovirus infections, Rev. Sci. Tech., 19, 614, 10.20506/rst.19.2.1237 · DOI
  47. 2012, Firefly chemiluminescence and bioluminescence: Efficient generation of excited states, ChemPhysChem, 13, 2257, 10.1002/cphc.201200195 · DOI
  48. 2006, Structural basis for the spectral difference in luciferase bioluminescence, Nature, 440, 372, 10.1038/nature04542 · DOI
  49. 1987, Firefly luciferase is targeted to peroxisomes in mammalian cells, Proc. Natl. Acad. Sci. U.S.A., 84, 3264, 10.1073/pnas.84.10.3264 · DOI
  50. 1998, The difference in recognition of terminal tripeptides as peroxisomal targeting signal 1 between yeast and human is due to different affinities of their receptor Pex5p to the cognate signal and to residues adjacent to it, J. Biol. Chem., 273, 33635, 10.1074/jbc.273.50.33635 · DOI
  51. 2008, The peroxisome: still a mysterious organelle, Histochem. Cell Biol., 129, 421, 10.1007/s00418-008-0396-9 · DOI
  52. 2007, Bioluminescent assays for high-throughput screening, Assay Drug Dev. Technol., 5, 127, 10.1089/adt.2006.053 · DOI
  53. 2007, Reporter gene imaging of protein-protein interactions in living subjects, Curr. Opin. Biotechnol., 18, 31, 10.1016/j.copbio.2007.01.007 · DOI
  54. 2014, Optimization of the firefly luciferase reaction for analytical purposes, Adv. Biochem. Eng. Biotechnol., 145, 31
  55. 1996, Crystallization and preliminary diffraction studies of firefly luciferase from Photinus pyralis, Acta Crystallogr., Sect. D: Biol. Crystallogr., 52, 876, 10.1107/S0907444996002405 · DOI
  56. 2010, Molecular basis for the high-affinity binding and stabilization of firefly luciferase by PTC124, Proc. Natl. Acad. Sci. U.S.A., 107, 4878, 10.1073/pnas.0909141107 · DOI
  57. 2005, Crystal lattice as biological phenotype for insect viruses, Protein Sci., 14, 2741, 10.1110/ps.051516405 · DOI
  58. 2010, Altered lipid droplet dynamics in hepatocytes lacking triacylglycerol hydrolase expression, Mol. Biol. Cell, 21, 1991, 10.1091/mbc.E09-05-0364 · DOI
  59. 2010, Actin-based motility drives baculovirus transit to the nucleus and cell surface, J. Cell Biol., 190, 187, 10.1083/jcb.201001162 · DOI
  60. 2014, Approaches to time-resolved diffraction using an XFEL, Faraday Discuss., 171, 429, 10.1039/C4FD00025K · DOI
  61. 2012, Time-resolved structural studies at synchrotrons and X-ray free electron lasers: Opportunities and challenges, Curr. Opin. Struct. Biol., 22, 651, 10.1016/j.sbi.2012.08.006 · DOI
  62. 1993, Expression of Bombyx mori cytoplasmic polyhedrosis virus polyhedrin in insect cells by using a baculovirus expression vector, and its assembly into polyhedra, J. Gen. Virol., 74, 99, 10.1099/0022-1317-74-1-99 · DOI
  63. 2014, Room-temperature macromolecular serial crystallography using synchrotron radiation, IUCrJ, 1, 204, 10.1107/S2052252514010070 · DOI
  64. 2014, Fixed-target protein serial microcrystallography with an x-ray free electron laser, Sci. Rep., 4, 6026, 10.1038/srep06026 · DOI

Cited by

See all 42

Metadata

Authors
Schönherr, R., Klinge, M., Rudolph, J. M., Fita, K., Rehders, D., Lübber, F., Schneegans, S., Majoul, I. V., Duszenko, M., Betzel, C., Brandariz-Nuñez, A., Martinez-Costas, J., Duden, R., & Redecke, L.
Venue
Structural Dynamics
Published
2015-05-22
Volume
2
Issue
4
ISSN
2329-7778
Cited by
42
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.