Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities.
Open accessAbstract
Detection of different extracellular stimuli leading to functionally distinct outcomes is ubiquitous in cell biology, and is often mediated by differential regulation of positive and negative feedback loops that are a part of the signaling network. In some instances, these cellular responses are stimulated by small numbers of molecules, and so stochastic effects could be important. Therefore, we studied the influence of stochastic fluctuations on a simple signaling model with dueling positive and negative feedback loops. The class of models we have studied is characterized by single deterministic steady states for all parameter values, but the stochastic response is bimodal; a behavior that is distinctly different from models studied in the context of gene regulation. For example, when positive and negative regulation is roughly balanced, a unique deterministic steady state with an intermediate value for the amount of a downstream signaling product is found. However, for small numbers of signaling molecules, stochastic effects result in a bimodal distribution for this quantity, with neither mode corresponding to the deterministic solution; i.e., cells are in "on" or "off" states, not in some intermediate state. For a large number of molecules, the stochastic solution converges to the mean-field result. When fluctuations are important, we find that signal output scales with control parameters "anomalously" compared with mean-field predictions. The necessary and sufficient cond…
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The bistability in this system is entirely stochastic in nature.
“The bistability that results is entirely stochastic in nature, evident by the fact that the mean field time trajectory for I follows the average of the nonzero curves (Figure S2) [21].”
From A Model for How Signal Duration Can Determine Distinct Outcomes of Gene Transcription Programs (2012) · cites this paper as [21]
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A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell
Choi, P. J., Cai, L., Frieda, K., & Xie, X. S. (2008) · Science · doi:10.1126/science.1161427 · Cited by 438 · see citing works
Noise-induced symmetry breaking far from equilibrium and the emergence of biological homochirality
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A Model for How Signal Duration Can Determine Distinct Outcomes of Gene Transcription Programs
Fowler, K. D., Kuchroo, V. K., & Chakraborty, A. K. (2012) · PLoS ONE · doi:10.1371/journal.pone.0033018 · Cited by 6 · see citing works
“The bistability that results is entirely stochastic in nature, evident by the fact that the mean field time trajectory for I follows the average of the nonzero curves (Figure S2) [21].”
Self-citation
- Authors
- Artyomov, M. N., Das, J., Kardar, M., & Chakraborty, A. K.
- Affiliations
- *Chemistry,
- Departments of †Chemical Engineering,
- Physics, Massachusetts Institute of Technology, Cambridge, MA 02139
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2007-11-27
- Volume
- 104
- Issue
- 48
- Pages
- 18958-18963
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC2141890
- OpenAlex
- W2027733508
- Cited by
- 110
- References
- 4
- Citations by year
- 2026: 2 · 2024: 1 · 2023: 2 · 2022: 2 · 2021: 4 · 2020: 4 · 2019: 6 · 2018: 5 · 2017: 2 · 2016: 16 · 2015: 8 · 2014: 4 · 2013: 7 · 2012: 9
- FWCI
- 3.98
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Bulletin of the American Physical Society
- Funders
- National Institutes of Health (5p01ai071195-05)
- National Institute of Allergy and Infectious Diseases (P01AI-071195, 1-PO1-AI071195-01)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › stochastic dynamics and bifurcation
- Physical Sciences › Mathematics › Mathematical Physics › Stochastic processes and statistical mechanics
- Keywords
- stochastic gene expression, signal transduction, positive and negative feedback loops, bistability, bimodal distribution, mean-field approximation, noise-induced switching
- MeSH terms
- Algorithms, Antigens, Lymphocyte Activation, Models, Biological, Receptors, Antigen, T-Cell, Stochastic Processes, T-Lymphocytes, Signal Transduction, Feedback, Physiological
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