Cited by 110Gene Regulatory Network Analysisstochastic dynamics and bifurcationStochastic processes and statistical mechanics

Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities.

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Artyomov, Maxim N., Das, Jayajit, Kardar, Mehran, Chakraborty, Arup K.·2007·Proceedings of the National Academy of Sciences

Abstract

Detection of different extracellular stimuli leading to functionally distinct outcomes is ubiquitous in cell biology, and is often mediated by differential regulation of positive and negative feedback loops that are a part of the signaling network. In some instances, these cellular responses are stimulated by small numbers of molecules, and so stochastic effects could be important. Therefore, we studied the influence of stochastic fluctuations on a simple signaling model with dueling positive and negative feedback loops. The class of models we have studied is characterized by single deterministic steady states for all parameter values, but the stochastic response is bimodal; a behavior that is distinctly different from models studied in the context of gene regulation. For example, when positive and negative regulation is roughly balanced, a unique deterministic steady state with an intermediate value for the amount of a downstream signaling product is found. However, for small numbers of signaling molecules, stochastic effects result in a bimodal distribution for this quantity, with neither mode corresponding to the deterministic solution; i.e., cells are in "on" or "off" states, not in some intermediate state. For a large number of molecules, the stochastic solution converges to the mean-field result. When fluctuations are important, we find that signal output scales with control parameters "anomalously" compared with mean-field predictions. The necessary and sufficient cond…

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Authors
Artyomov, M. N., Das, J., Kardar, M., & Chakraborty, A. K.
Affiliations
  • *Chemistry,
  • Departments of †Chemical Engineering,
  • Physics, Massachusetts Institute of Technology, Cambridge, MA 02139
Venue
Proceedings of the National Academy of Sciences
Published
2007-11-27
Volume
104
Issue
48
Pages
18958-18963
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2027733508
Cited by
110
References
4
Citations by year
2026: 2 · 2024: 1 · 2023: 2 · 2022: 2 · 2021: 4 · 2020: 4 · 2019: 6 · 2018: 5 · 2017: 2 · 2016: 16 · 2015: 8 · 2014: 4 · 2013: 7 · 2012: 9
FWCI
3.98
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion)
  • Europe PMC (PubMed Central) (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
  • Bulletin of the American Physical Society
Funders
  • National Institutes of Health (5p01ai071195-05)
  • National Institute of Allergy and Infectious Diseases (P01AI-071195, 1-PO1-AI071195-01)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
  • Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › stochastic dynamics and bifurcation
  • Physical Sciences › Mathematics › Mathematical Physics › Stochastic processes and statistical mechanics
Keywords
stochastic gene expression, signal transduction, positive and negative feedback loops, bistability, bimodal distribution, mean-field approximation, noise-induced switching
MeSH terms
Algorithms, Antigens, Lymphocyte Activation, Models, Biological, Receptors, Antigen, T-Cell, Stochastic Processes, T-Lymphocytes, Signal Transduction, Feedback, Physiological

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