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Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction

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Yang, Xiaojing, Kuk, Jane, Moffat, Keith·2008·Proceedings of the National Academy of Sciences

Abstract

Phytochromes are red-light photoreceptors that regulate light responses in plants, fungi, and bacteria via reversible photoconversion between red (Pr) and far-red (Pfr) light-absorbing states. Here we report the crystal structure at 2.9 Å resolution of a bacteriophytochrome from Pseudomonas aeruginosa with an intact, fully photoactive photosensory core domain in its dark-adapted Pfr state. This structure reveals how unusual interdomain interactions, including a knot and an “arm” structure near the chromophore site, bring together the PAS (Per-ARNT-Sim), GAF (cGMP phosphodiesterase/adenyl cyclase/FhlA), and PHY (phytochrome) domains to achieve Pr/Pfr photoconversion. The PAS, GAF, and PHY domains have topologic elements in common and may have a single evolutionary origin. We identify key interactions that stabilize the chromophore in the Pfr state and provide structural and mutational evidence to support the essential role of the PHY domain in efficient Pr/Pfr photoconversion. We also identify a pair of conserved residues that may undergo concerted conformational changes during photoconversion. Modeling of the full-length bacteriophytochrome structure, including its output histidine kinase domain, suggests how local structural changes originating in the photosensory domain modulate interactions between long, cross-domain signaling helices at the dimer interface and are transmitted to the spatially distant effector domain, thereby regulating its histidine kinase activity.

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Metadata

Authors
Yang, X., Kuk, J., & Moffat, K.
Venue
Proceedings of the National Academy of Sciences
Published
2008-09-23
Volume
105
Issue
38
Pages
14715-14720
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2163280837
Cited by
316
References
39
FWCI
26.22
Type
journal article
Language
en
Open access
green

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CoChat. (2026). Citation check: Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction. https://app.cochat.ai/papers/10.1073/pnas.0806718105
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Yang, X., Kuk, J., & Moffat, K. (2008). Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.0806718105

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