Pattern discovery and cancer gene identification in integrated cancer genomic data
Mo, Qianxing, Wang, Sijian, Seshan, Venkatraman E., Olshen, Adam B., Schultz, Nikolaus, Sander, Chris, Powers, R. Scott, Ladanyi, Marc +1 more·2013·Proceedings of the National Academy of Sciences
Cited by (475)
Items 401–475 of 475
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- Supplementary Methods and Supplementary Figure and Table Legends from Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of CholangiocarcinomaApinya Jusakul, Ioana Cutcutache, Chern Han Yong, Jing Quan Lim, Mi Ni Huang, Nisha Padmanabhan, Vishwa Nellore, Sarinya Kongpetch, Alvin Wei Tian Ng, Ley Moy Ng et al. · 2023
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- Bayesian Multi-View Clustering given complex inter-view structureBenjamin D. Shapiro, Alexis J. Battle · 2024 · F1000Research
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- Additional file 7 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionPeifeng Ruan, Jamie L. Todd, Hongyu Zhao, Yi Liu, Richard Vinisko, Julia F. Söllner, Ramona Schmid, Robert J. Kaner, Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Additional file 6 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionPeifeng Ruan, Jamie L. Todd, Hongyu Zhao, Yi Liu, Richard Vinisko, Julia F. Söllner, Ramona Schmid, Robert J. Kaner, Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Integrating omics atlas in health informatics system design-an opinion articleIrene S. L. Zeng · 2024 · Frontiers in Digital Health
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- BiomiX, a User-Friendly Bioinformatic Tool for Automatized Multiomics Data Analysis and IntegrationC. Iperi, Á. Fernández-Ochoa, G. Barturen, Jacques-Olivier Pers, N. Foulquier, E. Bettacchioli, M. Alarcón-Riquelme, D. Cornec, A. Bordron, C. Jamin · 2024 · bioRxiv
- Bioinformatics for Multi-Omics Data IntegrationRajveer Singh Shekhawat, Pragya Kashyap, Asish Kumar Swain, Vedikaa Dhiman, Jyoti Sharma, Abhishek Kumar, Pankaj Yadav · 2024 · Elsevier eBooks
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- Cancer Subtype Classification Based on Graph Convolutional Network with Enhanced Structural FeatureYi Geng, Ruirui Ji, Xin Quan, Sifan Yang, Yuyao Hua, Wei Gao · 2024 · IEEE International Conference on Signal, Information and Data Processing (ICSIDP)
- Computational Approaches in Multi-Omics for Crop ImprovementJeshwanth Kannan, Tamilarasi Palani, Divya Selvakumar, Dhashnamurthi Vijayalakshmi, S. Varanavasiappan, Duraisamy Kavithamani, Jayakanthan Mannu · 2025 · Current Bioinformatics
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- Praxis-BGM: Clustering of Omics Data Using Semi-Supervised Transfer Learning for Gaussian Mixture Models via Natural-Gradient Variational InferenceQiran Jia, Jesse A. Goodrich, David V. Conti · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Additional file 13 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 4 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 9 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 5 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 11 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 4 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionRuan, Peifeng, Jamie L. Todd, Hongyu Zhao, Y. Liu, Richard Vinisko, Julia Soellner, Ramona Schmid, Kaner, Robert J., Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Additional file 1 of Estimation of total mediation effect for high-dimensional omics mediatorsTianzhong Yang, Jingbo Niu, Han Chen, Wei, Peng · 2021 · Figshare
- Additional file 5 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionRuan, Peifeng, Jamie L. Todd, Hongyu Zhao, Y. Liu, Richard Vinisko, Julia Soellner, Ramona Schmid, Kaner, Robert J., Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Additional file 14 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 2 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionRuan, Peifeng, Jamie L. Todd, Hongyu Zhao, Y. Liu, Richard Vinisko, Julia Soellner, Ramona Schmid, Kaner, Robert J., Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Additional file 1 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionRuan, Peifeng, Jamie L. Todd, Hongyu Zhao, Y. Liu, Richard Vinisko, Julia Soellner, Ramona Schmid, Kaner, Robert J., Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Additional file 8 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 1 of An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patientsTian, Suyan, Chi Wang · 2021 · Figshare
- Additional file 10 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 7 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 3 of Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progressionRuan, Peifeng, Jamie L. Todd, Hongyu Zhao, Y. Liu, Richard Vinisko, Julia Soellner, Ramona Schmid, Kaner, Robert J., Tracy Luckhardt, Megan Lee Neely et al. · 2023 · Figshare
- Additional file 12 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 1 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 2 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 2 of Correcting batch effects in large-scale multiomics studies using a reference-material-based ratio methodYu, Ying, Zhang, Naixin, Yuanbang Mai, Luyao Ren, Chen, Qiaochu, Zehui Cao, Chen, Qingwang, Liu, Yaqing, Wanwan Hou, Yang, Jingcheng et al. · 2023 · Figshare
- Additional file 3 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
- Additional file 6 of Multi-dimensional data integration algorithm based on random walk with restartWen, Yuqi, Song, Xinyu, Yan, Bowei, Yang, Xiaoxi, Wu, Lianlian, Leng, Dongjin, He, Song, Bo, Xiaochen · 2021 · Figshare
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- Multimodal Fusion of Gene Expression and Alternative Polyadenylation Profiles for Spatial Clusteringliping kang, xingyu Bi, Xiaohui Wu · 2025 · International Conference on Bioinformatics Research and Applications (ICBRA)
- Multi‐Omics Analysis Reveals the Molecular Subtypes and Confirmed the GREM1 as the Core GeneZhen‐Qing Li, Hui‐Rong Huang, Kerong Zhai, Bin Li · 2026 · The Journal of Gene Medicine
- Deep subspace fusion based on integrated self-supervision for cancer subtype identificationMin Li, Mingzhuang Zhang, Mingzh Lou, Shaobo Deng, Guangda Hou, Licao Wanzhang, Wengan Xu · 2026 · Journal of Bioinformatics and Computational Biology
- Multi-Omics Data Fusion for Colorectal Cancer Molecular Subtyping Using Sparse Multiple Canonical Correlation AnalysisLingli He, Kai Song, Sitan Qiao, Yabin Chen, Jiang Li, Qi Lin, Xin Wang · 2025 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
- Leveraging AI for integrating genomics, transcriptomics, and proteomicsManoj Kumar Jana, Deepesh Joshi, Deepika, Anami Ahuja, Piyal Mukherjee, Achal Kumar Srivastava, Mahesh Narayan, Sudip Kumar Das, Sahar Qazi, Neeraj Mohan Gupta et al. · 2026 · Elsevier eBooks
- Molecular characterization of rare thoraco-abdominal tumoursNoémie Leblay · 2018 · theses.fr (ABES)
- Analyses de données omiques : clustering et inférence de réseauxAudrey Hulot · 2020
- Integrating somatic and germline multi-omics data to improve our understanding of lung cancer : a computational biology perspectiveAurélie AG Gabriel · 2020
- Genomic characterisation of rare thoracic tumoursLise Mangiante · 2021
- MS-ConTab: multi-scale contrastive learning of mutation signatures for Pan-Cancer representation and stratificationYifan Dou, Adam Khadre, Ruben C. Petreaca, Golrokh Mirzaei · 2026 · Bioinformatics
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- Multi-Omic Bicluster Association Analysis (MOBAA)—a tool for identifying population subgroups with distinct multi-omics molecular profilesBinisha Hamal Mishra, Pashupati Prasad Mishra · 2026 · Bioinformatics Advances
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