Cited by 118Evolution and Paleontology StudiesMorphological variations and asymmetryEvolution and Genetic Dynamics

Pulsed evolution shaped modern vertebrate body sizes

Open access
Landis, Michael J., Schraiber, Joshua G.·2017·Proceedings of the National Academy of Sciences

Published version of a preprint

Abstract

Significance: The diversity of forms found among animals on Earth is striking. Despite decades of study, it has been difficult to reconcile the patterns of diversity seen between closely related species with those observed when studying single species on ecological timescales. We propose a set of models, called Lévy processes, to attempt to reconcile rapid evolution between species with the relatively stable distributions of phenotypes seen within species. These models, which have been successfully used to model stock market data, allow for long periods of stasis followed by bursts of rapid change. We find that many vertebrate groups are well fitted by Lévy models compared with models for which traits evolve toward a stationary optimum or evolve in an incremental and wandering manner.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1073/pnas.1710920114

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • A wide breadth of macroevolutionary data suggest that abrupt shifts and discontinuities have been a major feature of life on Earth.

    “a wide breadth of macroevolutionary data suggest that abrupt shifts and discontinuities have been a major feature of life on Earth”

    From Rethinking phylogenetic comparative methods (2018) · cites this paper as Landis and Schraiber 2017

    The Abstract describes evidence of rapid evolutionary pulses in fossil and ecological data, and the Discussion reports that jump models best explained body-size evolution in 32% of the 66 vertebrate clades studied. These passages support abrupt shifts as a feature of evolution, but the claim extends the finding to life on Earth generally; the paper says the prevalence of pulsed evolution across the Tree of Life remains unknown. Page numbers were not available in our copy. (LLM, conf=0.86)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

No references could be resolved yet.

Research works printed but not linked: 50

  1. [1]Hunt G 2007 The relative importance of directional change, random walks, and stasis in the evolution of fossil lineages Proc Natl Acad Sci USA 104 18404 18408 18003931 PMC2141789
  2. [2]Estes S Arnold SJ 2007 Resolving the paradox of stasis: Models with stabilizing selection explain evolutionary divergence on all timescales Am Nat 169 227 244 17211806
  3. [3]Thompson JN 1998 Rapid evolution as an ecological process Trends Ecol Evol 13 329 332 21238328
  4. [5]Hansen TF Houle D 2004 Evolvability, stabilizing selection, and the problem of stasis Phenotypic Integration: Studying the Ecology and Evolution of Complex Phenotypes Pigliucci M Preston K Oxford Univ Press Oxford 130 150
  5. [6]Simpson GG 1944 Tempo and Mode in Evolution Columbia Univ Press New York
  6. [7]Hunt G Hopkins MJ Lidgard S 2015 Simple versus complex models of trait evolution and stasis as a response to environmental change Proc Natl Acad Sci USA 112 4885 4890 25901309 PMC4413263
  7. [8]Uyeda JC Hansen TF Arnold SJ Pienaar J 2011 The million-year wait for macroevolutionary bursts Proc Natl Acad Sci USA 108 15908 15913 21873251 PMC3179053
  8. [9]Quintero I Wiens JJ 2013 Rates of projected climate change dramatically exceed past rates of climatic niche evolution among vertebrate species Ecol Lett 16 1095 1103 23800223
  9. [10]Harmon LJ 2010 Early bursts of body size and shape evolution are rare in comparative data Evolution 64 2385 2396 20455932
  10. [11]Landis MJ Schraiber JG Liang M 2013 Phylogenetic analysis using Lévy processes: Finding jumps in the evolution of continuous traits Syst Biol 62 193 204 23034385 PMC3566600
  11. [12]Duchen P 2017 Inference of evolutionary jumps in large phylogenies using Lévy processes Syst Biol 10.1093/sysbio/syx028 PMC5790141 28204787 · DOI
  12. [13]Hansen TF Martins EP 1996 Translating between microevolutionary process and macroevolutionary patterns: The correlation structure of interspecific data Evolution 50 1404 1417 28565714
  13. [14]Clavel J Morlon H 2017 Accelerated body size evolution during cold climatic periods in the Cenozoic Proc Natl Acad Sci USA 114 4183 4188 28373536 PMC5402425
  14. [21]Lande R 1976 Natural selection and random genetic drift in phenotypic evolution Evolution 30 314 334 28563044
  15. [23]Hunt G Bell MA Travis MP 2008 Evolution toward a new adaptive optimum: Phenotypic evolution in a fossil stickleback lineage Evolution 62 700 710 18081713
  16. [24]Lande R 1985 Expected time for random genetic drift of a population between stable phenotypic states Proc Natl Acad Sci USA 82 7641 7645 3865184 PMC391389
  17. [27]Cooper N Thomas GH Venditti C Meade A Freckleton RP 2015 A cautionary note on the use of Ornstein-Uhlenbeck models in macroevolutionary studies Biol J Linn Soc 118 64 77 PMC4949538 27478249
  18. [28]Pennell MW FitzJohn RG Cornwell WK Harmon LJ 2015 Model adequacy and the macroevolution of angiosperm functional traits Am Nat 186 E33 E50 26655160
  19. [30]Kostikova A Silvestro D Pearman PB Salamin N 2016 Bridging inter- and intraspecific trait evolution with a hierarchical Bayesian approach Syst Biol 65 417 431 26911152
  20. [31]Rohlfs RV Harrigan P Nielsen R 2013 Modeling gene expression evolution with an extended Ornstein–Uhlenbeck process accounting for within-species variation Mol Biol Evol 31 201 211 24113538 PMC3879452
  21. [32]Wright S 1932 The roles of mutation, inbreeding, crossbreeding and selection in evolution Proceedings of the VI International Congress of Genetics 1 356 366
  22. [33]Bokma F 2008 Detection of “punctuated equilibrium” by Bayesian estimation of speciation and extinction rates, ancestral character states, and rates of anagenetic and cladogenetic evolution on a molecular phylogeny Evolution 62 2718 2726 18752617
  23. [34]Rabosky DL 2009 Ecological limits on clade diversification in higher taxa Am Nat 173 662 674 19302027
  24. [35]Barndorff-Nielsen OE Mikosch T Resnick SI 2012 Lévy Processes: Theory and Applications Springer Science & Business Media New York
  25. [37]Paradis E Claude J Strimmer K 2004 APE: Analyses of phylogenetics and evolution in R language Bioinformatics 20 289 290 14734327
  26. [39]Pennell MW 2014 Geiger v2. 0: An expanded suite of methods for fitting macroevolutionary models to phylogenetic trees Bioinformatics 30 2216 2218 24728855
  27. [41]Jetz W Thomas G Joy J Hartmann K Mooers A 2012 The global diversity of birds in space and time Nature 491 444 448 23123857
  28. [42]Gingerich PD 2000 Arithmetic or geometric normality of biological variation: An empirical test of theory J Theor Biol 204 201 221 10887902
  29. [43]Boettiger C Lang D Wainwright P 2012 rfishbase: Exploring, manipulating and visualizing FishBase data from R J Fish Biol 81 2030 2039 23130696
  30. [45]Cowman P Bellwood D 2011 Coral reefs as drivers of cladogenesis: Expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots J Evol Biol 24 2543 2562 21985176
  31. [46]Santini F Sorenson L Alfaro ME 2013 A new phylogeny of tetraodontiform fishes (Tetraodontiformes, Acanthomorpha) based on 22 loci Mol Phylogenet Evol 69 177 187 23727595
  32. [47]Santini F Sorenson L Alfaro ME 2013 A new multi-locus timescale reveals the evolutionary basis of diversity patterns in triggerfishes and filefishes (Balistidae, Monacanthidae; Tetraodontiformes) Mol Phylogenet Evol 69 165 176 23727054
  33. [48]Sorenson L Santini F Carnevale G Alfaro ME 2013 A multi-locus timetree of surgeonfishes (Acanthuridae, Percomorpha), with revised family taxonomy Mol Phylogenet Evol 68 150 160 23542000
  34. [49]Bloom DD Lovejoy NR 2014 The evolutionary origins of diadromy inferred from a time-calibrated phylogeny for Clupeiformes (herring and allies) Proc R Soc Biol Sci 281 2013.2081 PMC3906930 24430843
  35. [50]Roxo FF 2014 Molecular phylogeny and biogeographic history of the armored Neotropical catfish subfamilies Hypoptopomatinae, Neoplecostominae and Otothyrinae (Siluriformes: Loricariidae) PLoS One 9 e105564 25148406 PMC4141799
  36. [51]Campanella D 2015 Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria) Mol Phylogenet Evol 86 8 23 25769409
  37. [52]Dornburg A Moore J Beaulieu JM Eytan RI Near TJ 2015 The impact of shifts in marine biodiversity hotspots on patterns of range evolution: Evidence from the Holocentridae (squirrelfishes and soldierfishes) Evolution 69 146 161 25407924
  38. [53]Martin SD Bonett RM 2015 Biogeography and divergent patterns of body size disparification in North American minnows Mol Phylogenet Evol 93 17 28 26210938
  39. [54]Pyron RA Wiens JJ 2011 A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians Mol Phylogenet Evol 61 543 583 21723399
  40. [55]De Lisle SP Rowe L 2013 Correlated evolution of allometry and sexual dimorphism across higher taxa Am Nat 182 630 639 24107370
  41. [56]Wright AM Lyons KM Brandley MC Hillis DM 2015 Which came first: The lizard or the egg? Robustness in phylogenetic reconstruction of ancestral states J Exp Zool B Mol Dev Evol 324 504 516 26227660
  42. [57]Jaffe AL Slater GJ Alfaro ME 2011 The evolution of island gigantism and body size variation in tortoises and turtles Biol Lett 7 558 561 21270022 PMC3130210
  43. [59]Dunning JB Jr 2007 CRC Handbook of Avian Body Masses CRC Press Boca Raton, FL 2nd Ed
  44. [60]Vos RA Mooers AO 2006 A new dated supertree of the Primates. PhD thesis (Simon Fraser University, Burnaby, BC, Canada)
  45. [61]Slater GJ Price SA Santini F Alfaro ME 2010 Diversity versus disparity and the radiation of modern cetaceans Proc Biol Sci 277 3097 3104 20484243 PMC2982053
  46. [62]Nyakatura K Bininda-Emonds OR 2012 Updating the evolutionary history of Carnivora (Mammalia): A new species-level supertree complete with divergence time estimates BMC Biol 10 12 22369503 PMC3307490
  47. [63]Bibi F 2013 A multi-calibrated mitochondrial phylogeny of extant Bovidae (Artiodactyla, Ruminantia) and the importance of the fossil record to systematics BMC Evol Biol 13 166 23927069 PMC3751017
  48. [64]Mitchell KJ 2014 Molecular phylogeny, biogeography, and habitat preference evolution of marsupials Mol Biol Evol 31 2322 2330 24881050
  49. [65]Schenk JJ Rowe KC Steppan SJ 2013 Ecological opportunity and incumbency in the diversification of repeated continental colonizations by muroid rodents Syst Biol 62 837 864 23925508
  50. [66]Shi JJ Rabosky DL 2015 Speciation dynamics during the global radiation of extant bats Evolution 69 1528 1545 25958922

Cited by

Sorted by citations

Authors
Landis, M. J., & Schraiber, J. G.
Affiliations
  • Yale University (US)
  • Temple University (US)
Corresponding author
Schraiber, Joshua G.
Venue
Proceedings of the National Academy of Sciences
Published
2017-11-07
Volume
114
Issue
50
Pages
13224-13229
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W2767280340
Cited by
118
References
0
Citations by year
2026: 6 · 2025: 10 · 2024: 12 · 2023: 18 · 2022: 14 · 2021: 11 · 2020: 10 · 2019: 23 · 2018: 12 · 2017: 2
FWCI
9.12
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
Funders
National Science Foundation (DBI-1612153, DBI-1402120)
Topics
  • Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
  • Physical Sciences › Mathematics › Geometry and Topology › Morphological variations and asymmetry
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
Keywords
Lévy processes, morphological evolution, Stasi, adaptive radiation, tipping points, comparative morphology, maximum likelihood fitting, evolutionary rates, fossil record
MeSH terms
Animals, Female, Male, Models, Genetic, Vertebrates, Evolution, Molecular, Body Size

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review