Cited by 38Microtubule and mitosis dynamicsCancer Treatment and PharmacologyCellular Mechanics and Interactions

Lattice defects induced by microtubule-stabilizing agents exert a long-range effect on microtubule growth by promoting catastrophes

Open access
Rai, Ankit, Liu, Tianyang, Katrukha, Eugene A., Estévez-Gallego, Juan, Manka, Szymon W., Paterson, Ian, Díaz, J. Fernando, Kapitein, Lukas C. +2 more·2021·Proceedings of the National Academy of Sciences

Published version of a preprint

Abstract

Significance: Microtubules are major cytoskeletal filaments important for cell division, growth, and differentiation. Microtubules can rapidly switch between phases of growth and shortening, and this dynamic behavior is essential for shaping microtubule arrays. To obtain insights into mechanisms controlling microtubule dynamics, here we used microtubule-stabilizing agents such as Taxol and their fluorescent analogs to manipulate microtubule protofilament number and generate stable defects in microtubule lattices that can be visualized using fluorescence microscopy. We show that microtubule polymerization rate increases with protofilament number and that drug-induced microtubule lattice discontinuities can promote plus-end catastrophes at a distance of several micrometers. Our data indicate that structural defects in the microtubule wall can have long-range propagating effects on microtubule tip dynamics.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1073/pnas.2112261118

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

No citation lists for this paper

No citation lists for this paper yet — checked again daily.

References 67 · Cited by 38

Research works printed but not linked: 59

  1. [1]A. Desai, T. J. Mitchison, Microtubule polymerization dynamics. Annu. Rev. Cell Dev. Biol. 13, 83– 117 (1997). 9442869
  2. [2]A. Akhmanova, M. O. Steinmetz, Control of microtubule organization and dynamics: Two ends in the limelight. Nat. Rev. Mol. Cell Biol. 16, 711– 726 (2015). 26562752
  3. [3]M. K. Gardner, M. Zanic, J. Howard, Microtubule catastrophe and rescue. Curr. Opin. Cell Biol. 25, 14– 22 (2013). 23092753 PMC3556214
  4. [4]A. Aher, A. Akhmanova, Tipping microtubule dynamics, one protofilament at a time. Curr. Opin. Cell Biol. 50, 86– 93 (2018). 29573640
  5. [5]D. J. Odde, L. Cassimeris, H. M. Buettner, Kinetics of microtubule catastrophe assessed by probabilistic analysis. Biophys. J. 69, 796– 802 (1995). 8519980 PMC1236309
  6. [6]M. K. Gardner, M. Zanic, C. Gell, V. Bormuth, J. Howard, The depolymerizing kinesins Kip3 (kinesin-8) and MCAK (kinesin-13) are catastrophe factors that destabilize microtubules by different mechanisms. Cell 147, 1092– 1103 (2011). 22118464
  7. [7]C. E. Coombes, A. Yamamoto, M. R. Kenzie, D. J. Odde, M. K. Gardner, Evolving tip structures can explain age-dependent microtubule catastrophe. Curr. Biol. 23, 1342– 1348 (2013). 23831290 PMC3762219
  8. [8]H. Doodhi, Termination of protofilament elongation by eribulin induces lattice defects that promote microtubule catastrophes. Curr. Biol. 26, 1713– 1721 (2016). 27321995
  9. [9]C. Duellberg, N. I. Cade, T. Surrey, Microtubule aging probed by microfluidics-assisted tubulin washout. Mol. Biol. Cell 27, 3563– 3573 (2016). 27489342 PMC5221588
  10. [10]H. Sui, K. H. Downing, Structural basis of interprotofilament interaction and lateral deformation of microtubules. Structure 18, 1022– 1031 (2010). 20696402 PMC2976607
  11. [11]D. Chrétien, S. D. Fuller, Microtubules switch occasionally into unfavorable configurations during elongation. J. Mol. Biol. 298, 663– 676 (2000). 10788328
  12. [12]S. Chaaban, G. J. Brouhard, A microtubule bestiary: Structural diversity in tubulin polymers. Mol. Biol. Cell 28, 2924– 2931 (2017). 29084910 PMC5662251
  13. [13]R. A. Cross, Microtubule lattice plasticity. Curr. Opin. Cell Biol. 56, 88– 93 (2019). 30415187
  14. [14]D. Chrétien, F. Metoz, F. Verde, E. Karsenti, R. H. Wade, Lattice defects in microtubules: Protofilament numbers vary within individual microtubules. J. Cell Biol. 117, 1031– 1040 (1992). 1577866 PMC2289483
  15. [15]I. Arnal, R. H. Wade, How does Taxol stabilize microtubules? Curr. Biol. 5, 900– 908 (1995). 7583148
  16. [16]J. Atherton, M. Stouffer, F. Francis, C. A. Moores, Microtubule architecture in vitro and in cells revealed by cryo-electron tomography. Acta Crystallogr. D Struct. Biol. 74, 572– 584 (2018). 29872007 PMC6096491
  17. [17]B. Vitre, EB1 regulates microtubule dynamics and tubulin sheet closure in vitro. Nat. Cell Biol. 10, 415– 421 (2008). 18364701
  18. [18]H. E. Foster, C. Ventura Santos, A. P. Carter, A cryo-ET study of microtubules in axons. bioRxiv [Preprint] (2021). 10.1101/2021.03.29.437471 (Accessed 9 November 2021). · DOI
  19. [19]L. Schaedel, Lattice defects induce microtubule self-renewal. Nat. Phys. 15, 830– 838 (2019). 31867047 PMC6924994
  20. [20]L. Schaedel, Microtubules self-repair in response to mechanical stress. Nat. Mater. 14, 1156– 1163 (2015). 26343914 PMC4620915
  21. [21]C. Aumeier, Self-repair promotes microtubule rescue. Nat. Cell Biol. 18, 1054– 1064 (2016). 27617929 PMC5045721
  22. [22]A. Dimitrov, Detection of GTP-tubulin conformation in vivo reveals a role for GTP remnants in microtubule rescues. Science 322, 1353– 1356 (2008). 18927356
  23. [23]G. J. Brouhard, L. M. Rice, Microtubule dynamics: An interplay of biochemistry and mechanics. Nat. Rev. Mol. Cell Biol. 19, 451– 463 (2018). 29674711 PMC6019280
  24. [24]A. Rai, Taxanes convert regions of perturbed microtubule growth into rescue sites. Nat. Mater. 19, 355– 365 (2020). 31819210
  25. [25]M. Zanic, J. H. Stear, A. A. Hyman, J. Howard, EB1 recognizes the nucleotide state of tubulin in the microtubule lattice. PLoS One 4, e7585 (2009). 19851462 PMC2761489
  26. [26]S. P. Maurer, F. J. Fourniol, G. Bohner, C. A. Moores, T. Surrey, EBs recognize a nucleotide-dependent structural cap at growing microtubule ends. Cell 149, 371– 382 (2012). 22500803 PMC3368265
  27. [27]J. Roostalu, The speed of GTP hydrolysis determines GTP cap size and controls microtubule stability. eLife 9, e51992 (2020). 32053491 PMC7018511
  28. [28]J. F. Díaz, J. M. Valpuesta, P. Chacón, G. Diakun, J. M. Andreu, Changes in microtubule protofilament number induced by Taxol binding to an easily accessible site. Internal microtubule dynamics. J. Biol. Chem. 273, 33803– 33810 (1998). 9837970
  29. [29]J. Estévez-Gallego, Structural model for differential cap maturation at growing microtubule ends. eLife 9, e50155 (2020). 32151315 PMC7064335
  30. [30]R. Matesanz, Modulation of microtubule interprotofilament interactions by modified taxanes. Biophys. J. 101, 2970– 2980 (2011). 22208196 PMC3244055
  31. [31]A. Ginsburg, Structure of dynamic, Taxol-stabilized, and GMPPCP-stabilized microtubule. J. Phys. Chem. B 121, 8427– 8436 (2017). 28820593
  32. [32]A. A. Hyman, D. Chrétien, I. Arnal, R. H. Wade, Structural changes accompanying GTP hydrolysis in microtubules: Information from a slowly hydrolyzable analogue guanylyl-(alpha,beta)-methylene-diphosphonate. J. Cell Biol. 128, 117– 125 (1995). 7822409 PMC2120325
  33. [33]J. M. Andreu, Solution structure of Taxotere-induced microtubules to 3-nm resolution. The change in protofilament number is linked to the binding of the Taxol side chain. J. Biol. Chem. 269, 31785– 31792 (1994). 7989352
  34. [34]P. Bieling, Reconstitution of a microtubule plus-end tracking system in vitro. Nature 450, 1100– 1105 (2007). 18059460
  35. [35]R. Mohan, End-binding proteins sensitize microtubules to the action of microtubule-targeting agents. Proc. Natl. Acad. Sci. U.S.A. 110, 8900– 8905 (2013). 23674690 PMC3670352
  36. [36]Y. Komarova, Mammalian end binding proteins control persistent microtubule growth. J. Cell Biol. 184, 691– 706 (2009). 19255245 PMC2686402
  37. [38]A. Aher, CLASP suppresses microtubule catastrophes through a single TOG domain. Dev. Cell 46, 40– 58.e8 (2018). 29937387 PMC6035287
  38. [39]G. E. Debs, M. Cha, X. Liu, A. R. Huehn, C. V. Sindelar, Dynamic and asymmetric fluctuations in the microtubule wall captured by high-resolution cryoelectron microscopy. Proc. Natl. Acad. Sci. U.S.A. 117, 16976– 16984 (2020). 32636254 PMC7382274
  39. [40]D. Chrétien, S. D. Fuller, E. Karsenti, Structure of growing microtubule ends: Two-dimensional sheets close into tubes at variable rates. J. Cell Biol. 129, 1311– 1328 (1995). 7775577 PMC2120473
  40. [41]J. R. McIntosh, Microtubules grow by the addition of bent guanosine triphosphate tubulin to the tips of curved protofilaments. J. Cell Biol. 217, 2691– 2708 (2018). 29794031 PMC6080942
  41. [42]P. Zakharov, Molecular and mechanical causes of microtubule catastrophe and aging. Biophys. J. 109, 2574– 2591 (2015). 26682815 PMC4701015
  42. [43]T. Kim, L. M. Rice, Long-range, through-lattice coupling improves predictions of microtubule catastrophe. Mol. Biol. Cell 30, 1451– 1462 (2019). 30943103 PMC6724698
  43. [44]V. VanBuren, L. Cassimeris, D. J. Odde, Mechanochemical model of microtubule structure and self-assembly kinetics. Biophys. J. 89, 2911– 2926 (2005). 15951387 PMC1366790
  44. [45]M. K. Gardner, Rapid microtubule self-assembly kinetics. Cell 146, 582– 592 (2011). 21854983 PMC3171214
  45. [46]K. J. Mickolajczyk, E. A. Geyer, T. Kim, L. M. Rice, W. O. Hancock, Direct observation of individual tubulin dimers binding to growing microtubules. Proc. Natl. Acad. Sci. U.S.A. 116, 7314– 7322 (2019). 30804205 PMC6462098
  46. [47]H. Bowne-Anderson, M. Zanic, M. Kauer, J. Howard, Microtubule dynamic instability: A new model with coupled GTP hydrolysis and multistep catastrophe. BioEssays 35, 452– 461 (2013). 23532586 PMC3677417
  47. [48]N. B. Gudimchuk, Mechanisms of microtubule dynamics and force generation examined with computational modeling and electron cryotomography. Nat. Commun. 11, 3765 (2020). 32724196 PMC7387542
  48. [49]E. H. Kellogg, Insights into the distinct mechanisms of action of taxane and non-taxane microtubule stabilizers from cryo-EM structures. J. Mol. Biol. 429, 633– 646 (2017). 28104363 PMC5325780
  49. [50]E. M. Mandelkow, R. Schultheiss, R. Rapp, M. Müller, E. Mandelkow, On the surface lattice of microtubules: Helix starts, protofilament number, seam, and handedness. J. Cell Biol. 102, 1067– 1073 (1986). 3949873 PMC2114131
  50. [51]R. Zhang, B. LaFrance, E. Nogales, Separating the effects of nucleotide and EB binding on microtubule structure. Proc. Natl. Acad. Sci. U.S.A. 115, E6191– E6200 (2018). 29915050 PMC6142192
  51. [52]R. Zhang, G. M. Alushin, A. Brown, E. Nogales, Mechanistic origin of microtubule dynamic instability and its modulation by EB proteins. Cell 162, 849– 859 (2015). 26234155 PMC4537847
  52. [53]T. Shima, Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport. J. Cell Biol. 217, 4164– 4183 (2018). 30297389 PMC6279379
  53. [54]A. Vemu, Severing enzymes amplify microtubule arrays through lattice GTP-tubulin incorporation. Science 361, eaau1504 (2018). 30139843 PMC6510489
  54. [55]M. O. Steinmetz, A. E. Prota, Microtubule-targeting agents: Strategies to hijack the cytoskeleton. Trends Cell Biol. 28, 776– 792 (2018). 29871823
  55. [56]C. Dumontet, M. A. Jordan, Microtubule-binding agents: A dynamic field of cancer therapeutics. Nat. Rev. Drug Discov. 9, 790– 803 (2010). 20885410 PMC3194401
  56. [57]K. R. Brunden, V. M. Lee, A. B. Smith, III, J. Q. Trojanowski, C. Ballatore, Altered microtubule dynamics in neurodegenerative disease: Therapeutic potential of microtubule-stabilizing drugs. Neurobiol. Dis. 105, 328– 335 (2017). 28012891 PMC5481496
  57. [58]S. Kamimura, Y. Fujita, Y. Wada, T. Yagi, H. Iwamoto, X-ray fiber diffraction analysis shows dynamic changes in axial tubulin repeats in native microtubules depending on paclitaxel content, temperature and GTP-hydrolysis. Cytoskeleton (Hoboken) 73, 131– 144 (2016). 26873786
  58. [59]R. Matesanz, Taxanes with high potency inducing tubulin assembly overcome tumoural cell resistances. Bioorg. Med. Chem. 22, 5078– 5090 (2014). 25047938
  59. [60]A. Rai., Kapitein Lab: Supplementary code, raw data and figure plots from “Lattice defects induced by microtubule-stabilizing agents exert a long-range effect on microtubule growth by promoting catastrophes.” Figshare. 10.6084/m9.figshare.c.5287663.v2. Deposited 13 November 2021. PMC8713758 34916292 · DOI

Authors
Rai, A., Liu, T., Katrukha, E. A., Estévez-Gallego, J., Manka, S. W., Paterson, I., Díaz, J. F., Kapitein, L. C., Moores, C. A., & Akhmanova, A.
Affiliations
  • Utrecht University (NL)
  • Institute of Structural and Molecular Biology (GB)
  • Structural and Chemical Biology, Centro de Investigaciones Biológicas Margarita Salas, Consejo Superior de Investigaciones Científicas 28040 Madrid, Spain;
  • University of Cambridge (GB)
  • Consejo Superior de Investigaciones Científicas (ES)
Corresponding author
Akhmanova, Anna
Venue
Proceedings of the National Academy of Sciences
Published
2021-12-16
Volume
118
Issue
51
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W4226164766
Cited by
38
References
67
Citations by year
2026: 6 · 2025: 5 · 2024: 5 · 2023: 13 · 2022: 6 · 2021: 3
FWCI
3.52
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • BIROn (Birkbeck, University of London) (acceptedVersion)
  • DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion, cc-by)
  • Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
  • UCL Discovery (University College London) (submittedVersion)
Funders
  • Chuo University
  • Ministerio de Ciencia, Innovación y Universidades (PID2019, PID2019-104545RB-I00)
  • Eidgenössische Technische Hochschule Zürich
  • Nederlandse Organisatie voor Wetenschappelijk Onderzoek (711.015.005)
  • Lomonosov Moscow State University
  • Directorate for Biological Sciences
  • Medical Research Council (MR/R000352/1)
  • Biotechnology and Biological Sciences Research Council (BB/N018176/1)
  • Consejo Superior de Investigaciones Científicas
  • FP7 Ideas: European Research Council (609822)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
  • Health Sciences › Medicine › Oncology › Cancer Treatment and Pharmacology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
Keywords
microtubule catastrophe, microtubule growth, protofilament number, microtubule-stabilizing agents, microtubule dynamics, microtubule severing, microtubule nucleation, cytoskeleton
MeSH terms
Biological Phenomena, Microtubule-Associated Proteins, Microtubules, Protein Binding, Tubulin, Paclitaxel, Tubulin Modulators, Polymerization

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review