Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 271

The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.

Liquid–liquid phase separation of tau protein: The crucial role of electrostatic interactions

Boyko, Solomiia, Qi, Xu, Chen, Tien-Hao, Surewicz, Krystyna, Surewicz, Witold K.·2019·Journal of Biological Chemistry

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1074/jbc.ac119.009198

Cites

5 of 5 references verified0 citation errors · 0 not checkable

Statistics

Figures

Figure 1. LLPS of tau441. A, LLPS at different tau441 concentrations as monitored by turbidity (OD at 400 nm) at 37 °C as a function of ionic strength (NaCl concentration) and concentration of the crowding agent, PEG 10,000. Black, 10 mm NaCl; blue, 75 mm NaCl; red, 150 mm NaCl. Error bars, S.D. (n = 5). B, representative fluorescence microscopy images of tau441 under different experimental conditions. The images were obtained at room temperature using a 1:20 ratio of Alexa fluor 488–labeled to unlabeled protein. Scale bar, 3 μm. C, representative FRAP data obtained within 10 min after droplet formation by the addition of 10% PEG. Inset, images of droplets 0 and 40 s after photobleaching (scale bars, 5 μm). A.U., arbitrary units.
Figure 1. LLPS of tau441. A, LLPS at different tau441 concentrations as monitored by turbidity (OD at 400 nm) at 37 °C as a function of ionic strength (NaCl concentration) and concentration of the crowding agent, PEG 10,000. Black, 10 mm NaCl; blue, 75 mm NaCl; red, 150 mm NaCl. Error bars, S.D. (n = 5). B, representative fluorescence microscopy images of tau441 under different experimental conditions. The images were obtained at room temperature using a 1:20 ratio of Alexa fluor 488–labeled to unlabeled protein. Scale bar, 3 μm. C, representative FRAP data obtained within 10 min after droplet formation by the addition of 10% PEG. Inset, images of droplets 0 and 40 s after photobleaching (scale bars, 5 μm). A.U., arbitrary units.CC BY · PubMed Central
Figure 2. The effect of 1,6-hexanediol (1,6-HD) and temperature on LLPS of tau441. A, turbidity in the absence (gray) and presence (red) of 10% (v/w) 1,6-hexanediol. Experiments were performed at 37 °C in the presence of 10% PEG. Error bars, S.D. (n = 5). B, representative fluorescence microscopy images recorded at room temperature in a buffer containing 150 mm NaCl and 10% PEG in the absence (top) and presence of 10% 1,6-hexanediol (bottom). Scale bar, 3 μm. C, turbidity of tau411 (10 μm) in the presence of PEG (10%) as a function of temperature. Samples were prepared by rapidly mixing protein and PEG solutions preheated to 75 °C, and turbidity was monitored in a cooling cycle by decreasing temperature at a rate of 2.5 degrees/min. Error bars, S.D. (n = 4).
Figure 2. The effect of 1,6-hexanediol (1,6-HD) and temperature on LLPS of tau441. A, turbidity in the absence (gray) and presence (red) of 10% (v/w) 1,6-hexanediol. Experiments were performed at 37 °C in the presence of 10% PEG. Error bars, S.D. (n = 5). B, representative fluorescence microscopy images recorded at room temperature in a buffer containing 150 mm NaCl and 10% PEG in the absence (top) and presence of 10% 1,6-hexanediol (bottom). Scale bar, 3 μm. C, turbidity of tau411 (10 μm) in the presence of PEG (10%) as a function of temperature. Samples were prepared by rapidly mixing protein and PEG solutions preheated to 75 °C, and turbidity was monitored in a cooling cycle by decreasing temperature at a rate of 2.5 degrees/min. Error bars, S.D. (n = 4).CC BY · PubMed Central
Figure 3. The effect of truncations and deletions on the propensity of tau441 to undergo LLPS. A, top, net charge per residue (NCPR) plot for tau441 at neutral pH generated using the algorithm available on the CIDER (33) webserver with a five-residue window. Bottom, schematic diagram of tau441 deletion/truncation variants used in this study. B, turbidity of individual tau variants (10 μm in each case) as a function of PEG concentration. Error bars, S.D. (n = 3). C, representative fluorescence microscopy images for different tau variants (10 μm in each case) in the presence of 12% PEG. Scale bars, 3 μm.
Figure 3. The effect of truncations and deletions on the propensity of tau441 to undergo LLPS. A, top, net charge per residue (NCPR) plot for tau441 at neutral pH generated using the algorithm available on the CIDER (33) webserver with a five-residue window. Bottom, schematic diagram of tau441 deletion/truncation variants used in this study. B, turbidity of individual tau variants (10 μm in each case) as a function of PEG concentration. Error bars, S.D. (n = 3). C, representative fluorescence microscopy images for different tau variants (10 μm in each case) in the presence of 12% PEG. Scale bars, 3 μm.CC BY · PubMed Central
Figure 4. The mixture of tauΔ1–117 and tauΔ118–441 undergoes LLPS. A, turbidity of the mixture of tauΔ1–117 and tauΔ118–441 (10 μm each) as a function of PEG concentration. Data for tau441 are shown for comparison. Error bars, S.D. (n = 3). B, representative fluorescence microscopy images showing co-localization of tauΔ1–117 with tauΔ118–441 in liquid droplets. The mixture of two proteins (10 μm each) contained Alexa fluor 488 (tauΔ1–117) and Alexa fluor 594 (tauΔ118–441) variants (5%). The images were obtained at room temperature in the presence of 150 mm NaCl and 12% PEG. Scale bar, 3 μm.
Figure 4. The mixture of tauΔ1–117 and tauΔ118–441 undergoes LLPS. A, turbidity of the mixture of tauΔ1–117 and tauΔ118–441 (10 μm each) as a function of PEG concentration. Data for tau441 are shown for comparison. Error bars, S.D. (n = 3). B, representative fluorescence microscopy images showing co-localization of tauΔ1–117 with tauΔ118–441 in liquid droplets. The mixture of two proteins (10 μm each) contained Alexa fluor 488 (tauΔ1–117) and Alexa fluor 594 (tauΔ118–441) variants (5%). The images were obtained at room temperature in the presence of 150 mm NaCl and 12% PEG. Scale bar, 3 μm.CC BY · PubMed Central

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Research works printed but not linked: 28

  1. Mandelkow, 2012, Biochemistry and cell biology of Tau protein in neurofibrillary degeneration, Cold Spring Harb. Perspect. Med, 2, a006247, 10.1101/cshperspect.a006247 · DOI
  2. Wang, 2016, Tau in physiology and pathology, Nat. Rev. Neurosci, 17, 5, 10.1038/nrn.2015.1 · DOI · Paper page
  3. Guo, 2017, Roles of tau protein in health and disease, Acta Neuropathol, 133, 665, 10.1007/s00401-017-1707-9 · DOI · Paper page
  4. Banani, 2017, Biomolecular condensates: organizers of cellular biochemistry, Nat. Rev. Mol. Cell Biol, 18, 285, 10.1038/nrm.2017.7 · DOI
  5. Shin, 2017, Liquid phase condensation in cell physiology and disease, Science, 357, eaaf4382, 10.1126/science.aaf4382 · DOI
  6. Uversky, 2017, Protein intrinsic disorder-based liquid–liquid phase transitions in biological systems: complex coacervates and membrane-less organelles, Adv. Colloid Interface Sci, 239, 97, 10.1016/j.cis.2016.05.012 · DOI
  7. Boeynaems, 2018, Protein phase separation: a new phase in cell biology, Trends Cell Biol, 28, 420, 10.1016/j.tcb.2018.02.004 · DOI
  8. Nedelsky, 2019, Bridging biophysics and neurology: aberrant phase transitions in neurodegenerative disease, Nat. Rev. Neurol, 15, 272, 10.1038/s41582-019-0157-5 · DOI
  9. Elbaum-Garfinkle, 2019, Matter over mind: liquid phase separation and neurodegeneration, J. Biol. Chem, 294, 7160, 10.1074/jbc.REV118.001188 · DOI
  10. Wegmann, 2018, Tau protein liquid–liquid phase separation can initiate tau aggregation, EMBO J, 37, e98049, 10.15252/embj.201798049 · DOI · Paper page
  11. Zhang, 2017, RNA stores tau reversibly in complex coacervates, PLoS Biol, 15, e2002183, 10.1371/journal.pbio.2002183 · DOI · Paper page
  12. Lin, 2018, Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions, Elife, 8, e42571, 10.7554/eLife.42571 · DOI · Paper page
  13. Molliex, 2015, Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization, Cell, 163, 123, 10.1016/j.cell.2015.09.015 · DOI · Paper page
  14. Lin, 2015, Formation and maturation of phase-separated liquid droplets by RNA-binding proteins, Mol. Cell, 60, 208, 10.1016/j.molcel.2015.08.018 · DOI
  15. Babinchak, 2019, The role of liquid-liquid phase separation in aggregation of the TDP-43 low complexity domain, J. Biol. Chem, 294, 6306, 10.1074/jbc.RA118.007222 · DOI
  16. Fulton, 1982, How crowded is the cytoplasm?, Cell, 30, 345, 10.1016/0092-8674(82)90231-8 · DOI · Paper page
  17. Kroschwald, 2015, Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules, Elife, 4, e06807, 10.7554/eLife.06807 · DOI
  18. Li, 2018, The physical forces mediating self-association and phase-separation in the C-terminal domain of TDP-43, Biochim. Biophys. Acta Proteins Proteomics, 1866, 214, 10.1016/j.bbapap.2017.10.001 · DOI
  19. Ribbeck, 2002, The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion, EMBO J, 21, 2664, 10.1093/emboj/21.11.2664 · DOI
  20. Burke, 2015, Residue-by-residue view of in vitro FUS granules that bind the C-terminal domain of RNA polymerase II, Mol. Cell, 60, 231, 10.1016/j.molcel.2015.09.006 · DOI · Paper page
  21. Quiroz, 2015, Sequence heuristics to encode phase behaviour in intrinsically disordered protein polymers, Nat. Mater, 14, 1164, 10.1038/nmat4418 · DOI · Paper page
  22. Mair, 2016, FLEXITau: quantifying post-translational modifications of Tau protein in vitro and in human disease, Anal. Chem, 88, 3704, 10.1021/acs.analchem.5b04509 · DOI
  23. Gomes, 2019, The molecular language of membraneless organelles, J. Biol. Chem, 294, 7115, 10.1074/jbc.TM118.001192 · DOI
  24. Wang, 2018, A molecular grammar governing the driving forces for phase separation of prion-like RNA binding proteins, Cell, 174, 688, 10.1016/j.cell.2018.06.006 · DOI
  25. Zhu, 2015, Hyperphosphorylation of intrinsically disordered tau protein induces an amyloidogenic shift in its conformational ensemble, PLoS One, 10, e0120416, 10.1371/journal.pone.0120416 · DOI
  26. Despres, 2017, Identification of the Tau phosphorylation pattern that drives its aggregation, Proc. Natl. Acad. Sci. U.S.A, 114, 9080, 10.1073/pnas.1708448114 · DOI
  27. Barghorn, 2005, Purification of recombinant Tau protein and preparation of Alzheimer-paired helical filaments in vitro, Methods Mol. Biol, 299, 35
  28. Holehouse, 2017, CIDER: resources to analyze sequence-ensemble relationships of intrinsically disordered proteins, Biophys. J, 112, 16, 10.1016/j.bpj.2016.11.3200 · DOI

Cited by

See all 271

Metadata

Authors
Boyko, S., Qi, X., Chen, T.-H., Surewicz, K., & Surewicz, W. K.
Venue
Journal of Biological Chemistry
Publisher
Elsevier BV
Published
2019-07
Volume
294
Issue
29
Pages
11054-11059
ISSN
0021-9258
Cited by
271
References
5
Language
en
Funders
HHS | National Institutes of Health (NIH) (RF1 AG061797)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.