Splice-specific glycine receptor binding, folding, and phosphorylation of the scaffolding protein gephyrin
Open accessAbstract
The multimeric scaffolding protein gephyrin forms post-synaptic clusters at inhibitory sites, thereby anchoring inhibitory glycine (GlyR) and subsets of γ-aminobutyric acid type A (GABAA) receptors. Gephyrin is composed of three domains, the conserved N-terminal G- and C-terminal E-domain, connected by the central (C-) domain. In this study we investigated the oligomerization, folding and stability, GlyR β-loop binding, and phosphorylation of three gephyrin splice variants (Geph, Geph-C3, Geph-C4) after expression and purification from insect cells (Sf9). In contrast to Escherichia coli-derived trimeric gephyrin, we found that Sf9 gephyrins form hexamers as basic oligomeric form. In the case of Geph and Geph-C4, also high-oligomeric forms (∼900 kDa) were isolated. Partial proteolysis revealed a compact folding of the Gephyrin G and C domain in one complex, whereas a much lower stability for the E domain was found. After GlyR β-loop binding, the stability of the E domain increased in Geph and Geph-C4 significantly. In contrast, the E domain in Geph-C3 is less stable and binds the GlyR β-loop with one order of magnitude lower affinity. Finally, we identified 18 novel phosphorylation sites in gephyrin, of which all except one are located within the C domain. We propose two models for the domain arrangement in hexameric gephyrin based on the oligomerization of either the E or C domains, with the latter being crucial for the regulation of gephyrin clustering.
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Gephyrin post-translational modifications modulate its affinity for GABAergic and glycinergic receptors, thus balancing inhibitory stability with plastic remodeling.
“These modulate its affinity for GABAergic and glycinergic receptors, thus balancing inhibitory stability with plastic remodeling [57,58,59,60].”
From Molecular Physiology of the Neuronal Synapse (2026) · cites this paper as [58]
The paper’s introductory discussion (indexed under Abstract; page unavailable) says gephyrin phosphorylation can enhance glycine-receptor binding and that another phosphorylation site modulates GABAergic transmission and gephyrin clustering. It does not establish that these modifications alter gephyrin’s binding affinity for GABAergic receptors, or that affinity changes themselves balance stability with plastic remodeling. The paper discusses scaffold-mediated synaptic stability and plasticity more broadly. (LLM, conf=0.86)
Experimental — accuracy not yet measuredGephyrin phosphorylation within its central C-domain recruits the prolyl-isomerase Pin1, triggering conformational changes that modulate the gephyrin lattice's oligomerization.
“Specifically, gephyrin phosphorylation within its central C-domain recruits the prolyl-isomerase Pin1, triggering conformational changes that modulate the gephyrin lattice’s oligomerization.”
From Molecular Physiology of the Neuronal Synapse (2026) · cites this paper as [58]
The paper’s introductory passage says phosphorylation of C-domain residues Ser-188, Ser-194, and Ser-200 recruits Pin1 and alters gephyrin’s conformation, enhancing receptor binding. The Discussion links C-domain phosphorylation more broadly to oligomerization, but does not say that Pin1-induced conformational changes modulate lattice oligomerization. No page number is available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe synaptic localization of GlyRs is critically dependent on their interaction with the postsynaptic scaffolding protein gephyrin.
“The synaptic localization of GlyRs is critically dependent on their interaction with the postsynaptic scaffolding protein gephyrin [58].”
From Molecular Physiology of the Neuronal Synapse (2026) · cites this paper as [58]
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Cites
Large-scale phosphorylation analysis of mouse liver
Villén, J., Beausoleil, S. A., Gerber, S. A., & Gygi, S. P. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609836104 · Cited by 730 · see citing works
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Research works printed but not linked: 5
- Kirsch, J., Wolters, I., Triller, A., and Betz, H. (1993) Gephyrin antisense oligonucleotides prevent glycine receptor clustering in spinal neurons. Nature 366, 745-748
- Stallmeyer, B., Schwarz, G., Schulze, J., Nerlich, A., Reiss, J., Kirsch, J., and Mendel, R. R. (1999) The neurotransmitter receptor-anchoring protein gephyrin reconstitutes molybdenum cofactor biosynthesis in bacteria, plants, and mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 96, 1333-1338
- Tyagarajan, S. K., Ghosh, H., Yévenes, G. E., Nikonenko, I., Ebeling, C., Schwerdel, C., Sidler, C., Zeilhofer, H. U., Gerrits, B., Muller, D., and Fritschy, J. M. (2011) Regulation of GABAergic synapse formation and plasticity by GSK3-dependent phosphorylation of gephyrin. Proc. Natl. Acad. Sci. U.S.A. 108, 379 -384
- Ramming, M., Kins, S., Werner, N., Hermann, A., Betz, H., and Kirsch, J. (2000) Diversity and phylogeny of gephyrin. Tissue-specific splice vari- ants, gene structure, and sequence similarities to molybdenum cofactor- synthesizing and cytoskeleton-associated proteins. Proc. Natl. Acad. Sci.
- Nawrotzki, R., Islinger, M., Vogel, I., Volkl, A., and Kirsch, J. (2012) Ex- pression and subcellular distribution of gephyrin in non-neuronal tissues and cells. Histochem. Cell. Biol. doi: 10.1007/s00418-012-0914-7 · DOI
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Dejanovic, B., Djémié, T., Grünewald, N., Suls, A., Kress, V., Hetsch, F., Craiu, D., Zemel, M., Gormley, P., Lal, D., et al. (2015) · EMBO Molecular Medicine · doi:10.15252/emmm.201505323 · Cited by 49 · see citing works
Self-citationHowell, B. W., & Smith, K. M. (2019) · Pharmacological Research · doi:10.1016/j.phrs.2018.11.019 · Cited by 35 · see citing works
Macha, A., Liebsch, F., Fricke, S., Hetsch, F., Neuser, F., Johannes, L., Kress, V., Djémié, T., Santamaria-Araujo, J. A., Vilain, C., et al. (2022) · Human Molecular Genetics · doi:10.1093/hmg/ddab298 · Cited by 10 · see citing works
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“The synaptic localization of GlyRs is critically dependent on their interaction with the postsynaptic scaffolding protein gephyrin [58].”
- Authors
- Herweg, J., & Schwarz, G.
- Affiliations
- University of Cologne (DE)
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2012-04
- Volume
- 287
- Issue
- 16
- Pages
- 12645-12656
- ISSN
- 0021-9258 (ISSN-L)
- PMC
- PMC3339950
- OpenAlex
- W2156366033
- Cited by
- 75
- References
- 1
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 5 · 2023: 2 · 2022: 2 · 2021: 4 · 2020: 2 · 2019: 3 · 2018: 5 · 2017: 6 · 2016: 4 · 2015: 4 · 2014: 19 · 2013: 7 · 2012: 4
- FWCI
- 4.48
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Deutsche Forschungsgemeinschaft (SFB 635)
- Universität zu Köln
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nicotinic Acetylcholine Receptors Study
- Keywords
- gephyrin, glycine receptor, protein oligomerization, protein folding, protein stability, E domain, C-domain, G-domain, phosphorylation sites, inhibitory synapses
- MeSH terms
- Animals, Carrier Proteins, Cells, Cultured, Membrane Proteins, Neural Inhibition, Phosphorylation, Protein Binding, Synapses, Alternative Splicing, Protein Structure, Tertiary, Protein Folding, Receptors, Glycine, Receptors, GABA, Spodoptera, Protein Structure, Quaternary, Rats
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