Inhibitor-complexed Structures of the Cytochrome bc1 from the Photosynthetic Bacterium Rhodobacter sphaeroides
Open accessAbstract
The cytochrome bc(1) complex (bc(1)) is a major contributor to the proton motive force across the membrane by coupling electron transfer to proton translocation. The crystal structures of wild type and mutant bc(1) complexes from the photosynthetic purple bacterium Rhodobacter sphaeroides (Rsbc(1)), stabilized with the quinol oxidation (Q(P)) site inhibitor stigmatellin alone or in combination with the quinone reduction (Q(N)) site inhibitor antimycin, were determined. The high quality electron density permitted assignments of a new metal-binding site to the cytochrome c(1) subunit and a number of lipid and detergent molecules. Structural differences between Rsbc(1) and its mitochondrial counterparts are mostly extra membranous and provide a basis for understanding the function of the predominantly longer sequences in the bacterial subunits. Functional implications for the bc(1) complex are derived from analyses of 10 independent molecules in various crystal forms and from comparisons with mitochondrial complexes.
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For bacterial phosphotriesterase, maltose binding protein, choline oxidase, cytochrome bc1 complex, and many lid-gated enzymes, closed and open conformations are in equilibrium prior to ligand binding, permitting conformational selection at different catalytic steps.
“Conformational sampling for bacterial phosphotriesterase,443 maltose binding protein,444 and choline oxidase,445 cytochrome bc1 complex,446 and many other lid-gated enzymes indicated that the closed and open conformations are in equilibrium prior to ligand binding, permitting a conformational selection pathway at different catalytic steps.447”
From Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell (2016) · cites this paper as [446]
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References 56 · Cited by 137
Research works printed but not linked: 3
- Kim, H., Xia, D., Yu, C. A., Xia, J. Z., Kachurin, A. M., Zhang, L., Yu, L., and Deisenhofer, J. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 8026 -8033
- Lange, C., and Hunte, C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 1800 -2805
- Esser, L., Gong, X., Yang, S., Yu, L., Yu, C. A., and Xia, D. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 13045-13050
- Authors
- Esser, L., Elberry, M., Zhou, F., Yu, C.-A., Yu, L., & Xia, D.
- Affiliations
- National Institutes of Health (US)
- Oklahoma State University (US)
- Corresponding author
- Xia, Di
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2008-02
- Volume
- 283
- Issue
- 5
- Pages
- 2846-2857
- ISSN
- 0021-9258 (ISSN-L)
- OpenAlex
- W1968709706
- Cited by
- 137
- References
- 56
- Citations by year
- 2026: 3 · 2025: 2 · 2024: 1 · 2023: 4 · 2022: 2 · 2021: 8 · 2020: 3 · 2019: 7 · 2018: 8 · 2017: 7 · 2016: 15 · 2015: 5 · 2014: 12 · 2013: 11 · 2012: 17
- FWCI
- 2.91
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Cancer Institute
- National Institute of General Medical Sciences (GM30721)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Metalloenzymes and iron-sulfur proteins
- Keywords
- cytochrome bc1 complex, Rhodobacter sphaeroides, stigmatellin, antimycin, proton motive force, electron transfer, proton translocation
- MeSH terms
- Amino Acid Sequence, Antimycin A, Bacterial Proteins, Binding Sites, Iron-Sulfur Proteins, Models, Molecular, Molecular Sequence Data, Polyenes, Rhodobacter sphaeroides, Electron Transport Complex III, Mutagenesis, Site-Directed, Sequence Homology, Amino Acid, Crystallography, X-Ray, Proton-Motive Force, Protein Subunits, Multiprotein Complexes
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