Parameter Expansion for Data Augmentation
Abstract
Viewing the observed data of a statistical model as incomplete and augmenting its missing parts are useful for clarifying concepts and central to the invention of two well-known statistical algorithms: expectation-maximization (EM) and data augmentation. Recently, Liu, Rubin, and Wu demonstrated that expanding the parameter space along with augmenting the missing data is useful for accelerating iterative computation in an EM algorithm. The main purpose of this article is to rigorously define a parameter expanded data augmentation (PX-DA) algorithm and to study its theoretical properties. The PX-DA is a special way of using auxiliary variables to accelerate Gibbs sampling algorithms and is closely related to reparameterization techniques. We obtain theoretical results concerning the convergence rate of the PX-DA algorithm and the choice of prior for the expansion parameter. To understand the role of the expansion parameter, we establish a new theory for iterative conditional sampling under the transformation group formulation, which generalizes the standard Gibbs sampler. Using the new theory, we show that the PX-DA algorithm with a Haar measure prior (often improper) for the expansion parameter is always proper and is optimal among a class of such algorithms including reparameterization.
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The overparameterization reduces dependence among the parameters in a hierarchical model and improves MCMC convergence.
“The overparameterization reduces dependence among the parameters in a hierarchical model and improves MCMC convergence (Liu, Rubin, and Wu, 1998, Liu and Wu, 1999, van Dyk and Meng, 2001, Gelman et al., 2005).”
From Prior distributions for variance parameters in hierarchical models (comment on article by Browne and Draper) (2006) · cites this paper as Liu and Wu, 1999
Cites
Multiple Imputation for Nonresponse in Surveys
Rubin, D. B. (1987) · Wiley Series in Probability and Statistics · doi:10.1002/9780470316696 · Cited by 20,701 · see citing works
Parameter expansion to accelerate EM: the PX-EM algorithm
Liu, C. (1998) · Biometrika · doi:10.1093/biomet/85.4.755 · Cited by 433 · see citing works
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Gelman, A. (2006) · Bayesian Analysis · doi:10.1214/06-ba117a · Cited by 4,050 · see citing works
Analysis of variance—why it is more important than ever
Gelman, A. (2005) · The Annals of Statistics · doi:10.1214/009053604000001048 · Cited by 861 · see citing works
“…, α and τ , which are defined as follows: The model can be then expressed as The auxiliary parameters α are given a uniform prior distribution, and then this reduces to the original model [see Boscardin (1996), Meng and van Dyk ( 1997), Liu, Rubin and Wu (1998), Liu and Wu (1999) and Gelman (2004)].”
MethodEfficient variance components analysis across millions of genomes
Pazokitoroudi, A., Wu, Y., Burch, K. S., Hou, K., Zhou, A., Pasaniuc, B., & Sankararaman, S. (2020) · Nature Communications · doi:10.1038/s41467-020-17576-9 · Cited by 55 · see citing works
Self-citation
- Authors
- Liu, J. S., & Wu, Y. N.
- Affiliations
- Stanford University (US)
- University of California, Los Angeles (US)
- Venue
- Journal of the American Statistical Association
- Publisher
- Informa UK Limited
- Published
- 1999-12
- Volume
- 94
- Issue
- 448
- Pages
- 1264-1274
- ISSN
- 0162-1459 (ISSN-L)
- 1537-274X
- OpenAlex
- W2098601118
- Cited by
- 356
- References
- 2
- Citations by year
- 2026: 4 · 2025: 15 · 2024: 10 · 2023: 8 · 2022: 14 · 2021: 16 · 2020: 21 · 2019: 17 · 2018: 17 · 2017: 16 · 2016: 17 · 2015: 20 · 2014: 19 · 2013: 28 · 2012: 19
- FWCI
- 4.27
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of the American Statistical Association (publishedVersion)
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Markov Chains and Monte Carlo Methods
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods and Bayesian Inference
- Physical Sciences › Computer Science › Artificial Intelligence › Bayesian Methods and Mixture Models
- Keywords
- parameter expansion, data augmentation, auxiliary variables, reparameterization, convergence rate, expectation-maximization algorithm
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