Drug Target Prioritization for Alzheimer's Disease Using Protein Interaction Network Analysis
Abstract
Alzheimer's disease (AD) is an age-related neurodegenerative disorder that accounts for numerous deaths worldwide. AD is the most common cause of dementia, characterized by accumulation of fibrous amyloid beta protein in the brain with clinical symptoms, such as loss of intellectual and social skills, gradually leading to the death of brain cells. The genetic complexity of AD during disease progression requires a systems-level understanding to design viable therapeutics. We present an integrative computational analysis to prioritize AD-associated genes outlined through a protein–protein interaction network. Multiple topological parameters of the network were considered to target proteins which are accountable for disease susceptibility. Furthermore, in silico protein structure modeling and molecular dynamics simulation approaches were implemented to characterize presenilin 2 ( PSEN2 ) protein as one of the leading targets in the network. The findings are constructive to aid future drug discovery endeavors in the treatment of AD.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Integration with protein-protein interaction (PPI) networks has refined AD models by connecting transcriptomic and proteomic layers, particularly when combined with tissue-specific data or prior biological knowledge.
“Integration with protein–protein interaction (PPI) networks has further refined AD models by connecting transcriptomic and proteomic layers, particularly when combined with tissue-specific data or prior biological knowledge303, 304, 305.”
From Artificial intelligence-driven multi-omics approaches in Alzheimer's disease: Progress, challenges, and future directions (2025) · cites this paper as [304]
Cites
Weiner, M. W., Veitch, D. P., Aisen, P. S., Beckett, L. A., Cairns, N. J., Cedarbaum, J., Green, R. C., Harvey, D., Jack, C. R., Jagust, W., et al. (2015) · Alzheimer's & Dementia · doi:10.1016/j.jalz.2014.11.001 · Cited by 348 · see citing works
Phosphorylation of Tau at S422 is enhanced by Aβ in TauPS2APP triple transgenic mice
Grueninger, F., Bohrmann, B., Czech, C., Ballard, T. M., Frey, J. R., Weidensteiner, C., von Kienlin, M., & Ozmen, L. (2010) · Neurobiology of Disease · doi:10.1016/j.nbd.2009.09.004 · Cited by 117 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Ren, F., Wei, J., Chen, Q., Hu, M., Yu, L., Mi, J., Zhou, X., Qin, D., Wu, J., & Wu, A. (2025) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2025.07.030 · Cited by 97 · see citing works
Sebastian, S., Roy, S., & Kalita, J. (2025) · Journal of Biomedical Informatics · doi:10.1016/j.jbi.2025.104797 · Cited by 10 · see citing works
- Authors
- Podder, A., Pandit, M., & Narayanan, L.
- Affiliations
- University of Delhi (IN)
- Corresponding author
- Narayanan, Latha
- ORCID
- Podder, Avijit
- Venue
- OMICS: A Journal of Integrative Biology
- Publisher
- SAGE Publications
- Published
- 2018-10-01
- Volume
- 22
- Issue
- 10
- Pages
- 665-677
- ISSN
- 1536-2310 (ISSN-L)
- 1557-8100
- OpenAlex
- W2896930416
- Cited by
- 14
- References
- 2
- Citations by year
- 2026: 1 · 2025: 5 · 2024: 2 · 2023: 2 · 2022: 1 · 2020: 1 · 2019: 2
- FWCI
- 0.52
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- OMICS A Journal of Integrative Biology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Department of Biotechnology, Ministry of Science and Technology, India
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Physical Sciences › Computer Science › Computational Theory and Mathematics › Computational Drug Discovery Methods
- Keywords
- Alzheimer's disease, drug target prioritization, protein-protein interaction network, network topology, presenilin 2, amyloid-beta, molecular dynamics simulation, drug discovery
- MeSH terms
- Alzheimer Disease, Computer Simulation, Models, Molecular, Drug Delivery Systems, Protein Structure, Tertiary, Disease Progression, Molecular Dynamics Simulation, Protein Interaction Maps
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review