A survey of sequence alignment algorithms for next-generation sequencing

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Items 701–800 of 876

1. Calibrating seed-based alignment heuristics with Sesame
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2. Analysis and Simulation Methods for Artificial Selection Experiments in the Investigation of the Genetic Basis of Complex Traits
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3. Genome Informatics
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5. Negative regulation of miRNAs sorting in EVs: the RNA-binding protein PCBP2 impairs SYNCRIP-mediated miRNAs EVs loading
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6. Statistical methods for analysis of genetic data
   Christopher R. Cabanski · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
7. Développement de méthodes et d'algorithmes pour la caractérisation et l'annotation des transcriptomes avec les séquenceurs haut débit.
   Nicolas Philippe · 2011 · theses.fr (ABES)
8. A computational approach for comparative oncogenomics using mouse models
   Benjamin Thomas Brett · 2014
9. Apport de la bioinformatique dans le cadre de la médecine moléculaire
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10. The clinical and genetic characteristics of congenital myasthenic syndromes
    Amina Chaouch · 2014
11. Transcriptomic Technologies and Statistical Data Analysis
    Elizabeth A. Purdom, Sach Mukherjee · 2011 · Wiley eBooks
12. Identification of Nucleotide Variation in Genomes Using Next‐Generation Sequencing
    Hendrik‐Jan Megens, Martien A. M. Groenen · 2011 · Wiley eBooks
13. Gene Expression Analysis Using RNA-Seq from Organisms Lacking Substantial Genomic Resources
    Yingjia Shen, Tzintzuni Garcia, Beckett Ronald · 2011 · InTech eBooks
14. Detecting Dysregulated Processes and Pathways
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15. Towards locality aware de novo dna assembly of short reads in colour space
    Vincenzo-Maria Cappelleri · 2011
16. Determining differential expression of Splice Variants in RNA-seq
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17. Identificação de polimorfismos em região do cromossomo 2 da galinha associado a deposição de músculo
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18. Genetic and phenotypic heterogeneity in autosomal recessive retinal disease
    Panagiotis I. Sergouniotis · 2012 · UCL Discovery (University College London)
19. Languages of lossless seeds
    Karel Břinda · 2014 · Electronic Proceedings in Theoretical Computer Science
20. Characterization of Root Transcriptome among Korean Ginseng Cultivars and American Ginseng using Next Generation Sequencing
    Ick-Hyun Jo, Young-Chang Kim, Hoon-Lee Seung, J. Kim, S. Kim, D. Hyun, Dong Hwi Kim, Kee-Hong Kim, H. Kim, J. Chung et al. · 2014 · Korean Journal of Medicinal Crop Science
21. A Parallel Algorithm for the Best k-Mismatches Alignment Problem
    Cristian Del Fabbro, Fabio Tardivo, Alberto Policriti · 2014 · Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)
22. Current Massively Parallel Sequencing Technologies: Platforms and Reporting Considerations
    John R. ten Bosch, Wayne W. Grody · 2014 · Springer eBooks
23. Trade-offs between the sensitivity and the speed of the FPGA-based sequence aligner
    Peng Chen, Chao Wang, Xi Li, Xuehai Zhou, Aili Wang, Ray C. C. Cheung · 2014 · International Symposium on Integrated Circuits
24. Grabfast: A CUDA based GPU accelerated fast short sequence alignment algorithm
    Ankur Narang, Jyothish Soman, Sheetal Lahabar · 2012 · IEEE International Conference on High Performance Computing, Data, and Analytics
25. Bioinformatics Approaches to the Study of MicroRNAs
    Ravi Gupta, Ramana V. Davuluri · 2013 · Springer eBooks
26. Inexact Mapping of Short Biological Sequences in High Performance Computational Environments
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27. A SURVEY ON NGS - SHORT READ ALIGNMENT IN HIGH PERFORMANCE COMPUTING
    Govindan Raja · 2014 · International Journal of Research in Engineering and Technology
28. Statistical Methods For Genome Variant Calling And Population Genetic Inference From Next-Generation Sequencing Data
    Xin Ma · 2012 · eCommons (Cornell University)
29. Cancer Genomics: New Software tools Making Sequencing more Accessible
    Enguo Chen, Pengyuan Liu, Yan Lü · 2014 · Personalized Medicine
30. Analysis of hepatic microRNA expression in postpartum dairy cows in negative energy balance
    Attia Fatima · 2014 · ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe – University of Galway)
31. Analytical Approaches for Exome Sequence Data
    Andrew R Collins · 2012 · Translational bioinformatics
32. Implementation of Genome Sequencing Assays
    Tina M. Hambuch, Carri-Lyn Mead · 2014 · Springer eBooks
33. Molekulargenetische und zytogenetische Redaktion: H.-G. Klein
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34. METHOD Open Access
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35. Desenvolvimento de um sistema integrado para o tratamento de dados de sequenciação de próxima geração
    Escola de Engenharia · 2013
36. Parallel stochastic simulators in systems biology: the evolution of the species
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37. Anomalias genéticas e epigenéticas no tumor embrionário hepatoblastoma
    Tatiane Cristina Rodrigues · 2015 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
38. Targeted Re-sequencing in Psychiatric Disorders
    André Altmann, Peter C Weber · 2014 · Neuromethods
39. Assessing the relationship between chromatin and splicing factors in alternative splicing
    Isaac Kremsky · 2015 · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
40. Assessment of Alignment Algorithms, Variant Discovery and Genotype Calling Strategies in Exome Sequencing Data
    Anthony M. Corbett · 2015 · RIT Scholar Works (Rochester Institute of Technology)
41. Implementation of Genome Sequencing Assays
    Joshua L. Deignan · 2014 · Springer eBooks
42. Reduced representations for efficient analysis of genomic data
    Md Pavel Mahmud · 2014
43. Genomic analysis of regulatory mechanisms involved in secondary metabolite production
    Marlene Castro-Melchor · 2010 · University of Minnesota Digital Conservancy (University of Minnesota)
44. The development and application of bioinformatics methods and software tools for computational single nucleotide polymorphism discovery
    Michał T. Lorenc · 2015 · The University of Queensland
45. AO DIFERENCIAL A PARTIR DA MATRIZ DE CONTAGENS GERADA COM DADOS DE RNA-SEQ
    Tiago Tambonis · 2015
46. Accelerating irregular applications on parallel hybrid platforms
    Abdullah Gharaibeh · 2015 · cIRcle (University of British Columbia)
47. Data Streams Fusion by Frequent Correlations Mining
    Radosław Z. Ziembiński · 2015 · Lecture notes in computer science
48. On Self-Reducibility and Reoptimization of Closest Substring Problem
    Jeffrey A. Aborot, Henry N. Adorna, Jhoirene Clemente · 2016 · arXiv (Cornell University)
49. A High Performance Architecture for an Exact Match Short-Read Aligner Using Burrows-Wheeler Aligner on FPGAs
    Dana Abdul Qader · 2015
50. Variações de novo e raras no genoma de pacientes com transtornos do espectro do autismo verbais e não verbais
    Viviane Neri de Souza Reis · 2014 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
51. POP-Java ::parallélisme et distribution orienté objet
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52. Homology and evidence-based genome annotation of Caenorhabditis species
    Bora Uyar · 2010 · Summit (Simon Fraser University)
53. TECHNICAL NOTE Open Access
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54. The impact of the quality filter for RNA-Seq data over differential expression profile.
    Pablo C. Gomes de, Siomar de Castro Soares, Adonney Allan de Oliveira Veras, Anne Cybelle Pinto, Luís Carlos Guimarães, Vasco Azevedo, Artur Silva, Rommel Thiago Jucá Ramos · 2014 · IWBBIO
55. GNATY: Optimized NGS Variant Calling and Coverage Analysis
    Beat Wolf, Pierre Kuonen, Thomas Dandekar · 2016 · Lecture notes in computer science
56. Analyse und Interpretation der Varianz von Genexpressionsdaten
    Christian Hummert · 2015 · Common Library Network (Der Gemeinsame Bibliotheksverbund)
57. LARGE SCALE ANNOTATION OF BIOMOLECULAR DATA USING INTEGRATED DATABASE MANAGEMENT TOOLS
    Pázmány Péter · 2014
58. Whole Genome Sequencing in Autism: Clinical Translation
    Ryan K. C. Yuen, Stephen W. Scherer · 2014 · WORLD SCIENTIFIC eBooks
59. Higher-level Analysis of RNA-Seq Experiment: Multiple Data Sets and Multiple Genes
    Bin Zhuo · 2016
60. An Overview And Comparison of Tools for RNA‐Seq Assembly
    Rasiah Loganantharaj, Thomas A. Randall · 2016
61. Investigating Convergence of Markov Chain Monte Carlo Methods for Bayesian Phylogenetic Inference
    David A. Spade · 2013 · OhioLink ETD Center (Ohio Library and Information Network)
62. Efficient alignment of next generation sequencing data using MapReduce on the cloud
    Rawan AlSaad, Qutaibah Marwan Malluhi, Mohamed Ibrahim Abouelhoda · 2012 · Cairo International Biomedical Engineering Conference
63. Tumor subclone structure reconstruction with genomic variation data
    Yi Qiao · 2014
64. SUMOylation in the Regulation of Androgen Receptor and Pioneer Factor FOXA1 in Prostate Cancer Cells
    Päivi Sutinen · 2015 · UEF eRepo (University of Eastern Finland)
65. Accurate Identification of Adenosine Deamination
    Gavin W. Wilson · 2016 · TSpace (University of Toronto)
66. Computational identification and functional characterisation of candidate DNA binding effectors in Phytophthora
    Graham B. Motion · 2015 · Discovery Research Portal (University of Dundee)
67. Using Text's Terms and Syntactical Properties for Document Similarity
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68. A Realistic Perspective
    Ari Adut · 2018 · Cambridge University Press eBooks
69. Computational Approaches for Variant Identification
    Diksha Garg, Ankita Jiwan, Shailendra Singh · 2017 · International Journal of Computer Applications
70. Alignment and Mapping
    Christoph Bleidorn · 2017 · Springer eBooks
71. Integrated Cloud Broker System and Its Experimental Evaluation
    Chan‐Hyun Youn, Min Chen, Patrizio Dazzi · 2017 · KAIST research series
72. Genomic integrative analysis to improve fusion transcript detection, liquid association and biclustering
    Shuchang Liu · 2017 · D-Scholarship@Pitt (University of Pittsburgh)
73. Gene Discovery and Glutamate Signaling Defects in Intellectual Disability and Autism
    Tejasvi Niranjan · 2015
74. Identificação da etiologia da deficiência intelectual esporádica por sequenciamento de exomas de afetados e seus pais
    Thaise Nayane Ribeiro Carneiro · 2017 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
75. CUSHAW Suite: Parallel and Efficient Algorithms for NGS Read Alignment
    Yongchao Liu, Bertil Schmidt · 2017 · Springer eBooks
76. String-Matching and Alignment Algorithms for Finding Motifs in NGS Data
    Giulia Fiscon, Emanuel Weitschek · 2017 · Springer eBooks
77. An extensible and scalable Pilot-MapReduce framework for data intensive applications on distributed cyberinfrastructure
    Pradeep Kumar Mantha · 2012
78. Determining the Mechanisms of Resistance to Drug Combinations and their Fitness Effects in Candida albicans
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79. Assemblage adaptatif de génomes et de méta-génomes par passage de messages
    Sébastien Boisvert · 2014 · Corpus Université Laval (Université Laval)
80. Meta-Alignment: Combining Sequence Aligners for Better Results
    Beat Wolf, Pierre Kuonen, Thomas Dandekar · 2018 · Lecture notes in computer science
81. Global Common Sequence Alignment Using Dynamic Window Algorithm
    Lalit Kumar Behera · 2018 · Lecture notes in networks and systems
82. BWT: An Index Structure to Speed-Up Both Exact and Inexact String Matching
    Yangjun Chen, Yujia Wu · 2018 · Studies in big data
83. СУБСТРАТНАЯ СПЕЦИФИЧНОСТЬ АЦИЛ-ЛИПИДНОЙ ?9-ДЕСАТУРАЗЫ ЖИРНЫХ КИСЛОТ ИЗ ЦИАНОБАКТЕРИИ CYANOBACTERIUM SP. IPPAS B-1200 С НЕОБЫЧНЫМ ЖИРНОКИСЛОТНЫМ СОСТАВОМ, "Физиология растений"
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84. Assay Validation**Disclaimer: The findings and conclusions in this chapter are those of the authors and do not necessarily represent the views of the Centers for Disease Control and Prevention/The Agency for Toxic Substances and Disease Registry.
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85. PROCESSAMENTO DE DADOS SEMÂNTICOS NA CLOUD: UM ESTUDO DE CASO COM O PROTEIN WORLD DATABASE
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86. Design & Validation of a Hybrid-capture Next-generation Sequencing-based T-cell Clonality Assay
    Etienne Mahé · 2016
87. Molecular Mechanisms of Activation Induced Deaminase Specificity
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88. Clinical Implementation of Next-Generation Sequencing (NGS) Assays
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89. A rare SMAD9 mutation identifies the BMP signalling pathway as a potential osteoanabolic target
    Celia Louise Gregson, Dylan J. M. Bergen, Paul Leo, Richard Barry Sessions, Lawrie Wheeler, April E. Hartley, Scott E. Youlten, Peter Ian Croucher, Aideen M McInerney-Leo, William Duncan Fraser et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
90. Genome-wide profiling of microRNAs and prediction of mRNA targets in 17 bovine tissues
    Min Wang, Amanda Jane Chamberlain, Claire Prowse-Wilkins, Christy J. Vander Jagt, Timothy Hancock, J.E. Pryce, Benjamin G. Cocks, Michael Edward Goddard, Ben J. Hayes · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
91. Fast and accurate alignment of barcoded reads
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92. Computational Tools for Annotating Antibiotic Resistance in Metagenomic Data
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93. Towards Accelerated Genome Informatics on Parallel HPC Platforms: The ReneGENE-GI Perspective
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94. Reads in NGS Are Distributed over a Sequence Very Inhomogeneously
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95. Identification Of Genetic Variation In Highly Divergent Regions Using Whole Exome Sequencing
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96. Improved Structural Variation Detection Facilitates the Discovery of Somatic Mutations in Single Post-Mitotic Neurons
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97. Approximate String Matching using a Bidirectional Index
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98. ExtendAlign: the post-analysis tool to correct and improve the alignment of dissimilar short sequences
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99. Dynamic regulation of DNA methylation in human T-cell biology
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100. Base 5 vs. Karp-Rabin as optimizations in the BLAST heuristic for the alignment of DNA sequences
     Franklin L. A. Cruz-Gamero, César Beltrán, Juan Carlos Cáceres · 2019 · IEEE International Conference on Electronics, Electrical Engineering and Computing (INTERCON)