Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control

Osorio, Daniel, Cai, James J·2021·Bioinformatics

DOI 10.1093/bioinformatics/btaa751

Cited by (217)

Items 101–200 of 217

Comprehensive guide for epigenetics and transcriptomics data quality control
Arianna Comendul, Frederique Murielle Ruf-Zamojski, Colby T. Ford, Pankaj Agarwal, Elena Zaslavsky, German Nudelman, Manoj Hariharan, Aliza B. Rubenstein, Hanna Pinças, Venugopalan D. Nair et al. · 2025 · STAR Protocols
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice
Werner J. D. Ouwendijk, Pavitra Roychoudhury, Anthony Lawrence Cunningham, Keith R. Jerome, David M. Koelle, Paul R. Kinchington, Ian Mohr, Angus C. Wilson, Georges M. G. M. Verjans, Daniel Pearce Depledge · 2024 · Journal of Virology
Pronounced early differentiation underlies zebra finch gonadal germ cell development
Matthew T. Biegler, Kirubel Belay, Wei Wang, Christina Szialta, Paul G. Collier, Ji‐Dung Luo, Bettina Haase, Gregory L. Gedman, Asha V. Sidhu, Elijah Harter et al. · 2024 · Developmental Biology
Single-cell RNA sequencing and binary hierarchical clustering define lung interstitial macrophage heterogeneity in response to hypoxia
Nzali V. Campbell, Claudia Silva Mickael, Sushil Kumar, Hui Zhang, Iain Leslie Campbell, Austin E. Gillen, Caio O. Trentin, Katrina Diener, Bifeng Gao, Vitaly O. Kheyfets et al. · 2022 · American Journal of Physiology-Lung Cellular and Molecular Physiology
A machine learning framework for scRNA-seq UMI threshold optimization and accurate classification of cell types
Isaac Bishara, Jinfeng Chen, Jason I. Griffiths, Andrea H. Bild, Aritro Nath · 2022 · Frontiers in Genetics
Multi-region spatial transcriptomics reveals region specific differences in response to amyloid beta (Aβ) plaque induced changes in Alzheimer’s disease (AD)
Odmaa Bayaraa, Michael Aksu, Evon M. DeBose-Scarlett, Emily Hocke, Vaibhav Kumar Jain, Shih‐Hsiu J. Wang, Dianne A. Cruz, Simon G. Gregory · 2025 · Human Genomics
Single-Cell Transcriptomics Sheds Light on Tumor Evolution: Perspectives from City of Hope’s Clinical Trial Teams
Patrick A. Cosgrove, Andrea H. Bild, Thanh Hue Dellinger, Behnam Badie, Jana Portnow, Aritro Nath · 2024 · Journal of Clinical Medicine
Sonic hedgehog medulloblastoma cells in co-culture with cerebellar organoids converge towards in vivo malignant cell states
Max J. van Essen, Alina Nicheperovich, Benjamin Schuster‐Böckler, Esther B. E. Becker, John Jacob · 2024 · Neuro-Oncology Advances
Single-cell RNA-seq reveals that granulosa cells are a target of phthalate toxicity in the ovary
Erik Mattson, Genoa R. Warner · 2025 · Toxicological Sciences
Comparison of single-cell long-read and short-read transcriptome sequencing via cDNA molecule matching: quality evaluation of the MAS-ISO-seq approach
Natalia Zajac, Qin Zhang, Anna Bratus-Neuenschwander, Weihong Qi, Hella Anna Bolck, Tülay Karakulak, Tamara Carrasco Oltra, Holger Moch, Abdullah Kahraman, Hubert Rehrauer · 2025 · NAR Genomics and Bioinformatics
Single-cell transcriptome analysis reveals secretin as a hallmark of human enteroendocrine cell maturation
Franc Hysenaj, Michael Lauber, Andrea Bast‐Habersbrunner, Markus List, Martin Klingenspor · 2024 · Scientific Reports
Research perspectives—Pipelines to human tendon transcriptomics
Lorenzo Ramos‐Mucci, Paula Sarmiento, Dianne Little, Sarah J. B. Snelling · 2022 · Journal of Orthopaedic Research®
Biology-inspired data-driven quality control for scientific discovery in single-cell transcriptomics
Ayshwarya Subramanian, Mikhail Alperovich, Yiming Yang, Bo Li · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Resident synovial macrophages in synovial fluid: Implications for immunoregulation
Karen I. Cyndari, Breanna M. Scorza, Zeb Ralph Zacharias, Danielle Pessôa-Pereira, Leela Strand, Kurayi G. Mahachi, Juan Marcos Oviedo, Lisa C. Gibbs, Katherine L. Butler, Graham Ausdal et al. · 2024 · Clinical Immunology
CRISPR/Cas9-based depletion of 16S ribosomal RNA improves library complexity of single-cell RNA-sequencing in planarians
Kuang‐Tse Wang, Carolyn E. Adler · 2023 · BMC Genomics
Single-Cell RNA Sequencing and Its Applications in Pituitary Research
Shuangjian Yang, Congcong Deng, Changqin Pu, Xuexue Bai, Chenxin Tian, Mengqi Chang, Ming Feng · 2024 · Neuroendocrinology
Construction of a hepatocytes-related and protein kinase–related gene signature in HCC based on ScRNA-Seq analysis and machine learning algorithm
Zhuoer Zhang, Lisha Mou, Zuhui Pu, Xiaoduan Zhuang · 2023 · Journal of Physiology and Biochemistry
Protocol to achieve high-resolution single-cell transcriptomics of cardiomyocytes in multiple species
Ditte Gry Ellman, Frederik Adam Bjerre, Sara Thornby Bak, Sabrina Bech Mathiesen, Eva Bang Harvald, Charlotte Harken Jensen, Ditte Caroline Andersen · 2024 · STAR Protocols
Integrating single-cell RNA-seq, bulk RNA-seq, and Mendelian randomization to elucidate the role of HLA-DPA1 expression levels and non-classical monocytes in the pathogenesis of idiopathic pulmonary arterial hypertension
Mei Chen, Lingpin Pang, Tao Huang, Weichao Liang, Qian Xian, Dingyu Guo, Ming Zhong, Lingyue Song, Zhihai Huang, Yiming Liu et al. · 2025 · International Journal of Biological Macromolecules
Visualizing scRNA-Seq data at population scale with GloScope
Hao Wang, William Torous, Boying Gong, Elizabeth A. Purdom · 2024 · Genome biology
State transition and intercellular communication of synovial fibroblasts in response to chronic and acute shoulder injuries unveiled by single-cell transcriptomic analyses
Jiabao Ju, Mingtai Ma, Yichong Zhang, Zhentao Ding, Jianhai Chen · 2023 · Connective Tissue Research
Natian and Ryabhatta—graphical user interfaces to create, analyze and visualize single-cell transcriptomic datasets
Sathiyanarayanan Manivannan, Vidu Garg · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Daniel Osorio, Parastoo Shahrouzi, Xavier Tekpli, Vessela Nedelcheva Kristensen, Marieke L. Kuijjer · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
GIP Receptor Agonism Attenuates GLP-1 Receptor Agonist Induced Nausea and Emesis in Preclinical Models
Tito Borner, Caroline E. Geisler, Samantha M. Fortin, Richard Cosgrove, Jorge Alsina‐Fernandez, Mridula Dogra, Sarah A. Doebley, Marcos J. Sanchez-Navarro, Rosa M. Leon, Jane Gaisinsky et al. · 2021
Comprehensive analysis of single-cell and bulk RNA sequencing data reveals an EGFR signature for predicting immunotherapy response and prognosis in pan-cancer
Changchun Ye, Xiaoya Chen, Zilu Chen, Shiyuan Liu, Ranran Kong, Wenhao Lin, Minxia Zhu, Xuejun Sun, Zhengshui Xu · 2025 · Frontiers in Immunology
Endoscopic healing in pediatric IBD perpetuates a persistent signature defined by Th17 cells with molecular and microbial drivers of disease
Kolja Siebert, Tim Faro, Nikolai Köhler, Hannes Hoelz, Sebastian Jarosch, Monica Steffi Matchado, Deborah Häcker, Federica De Zen, Mohammad Samer Hajji, Eberhard Lurz et al. · 2025 · Cell Reports Medicine
Lung NR3C1+ and CXCR6high T cells distinguish immunopathogenesis of human emphysema
Yun Zhang, Maor Sauler, David Brian Corry, Scott A. Ochsner, Sarah Perusich, Lizhen Song, Joshua Malo, Raúl San Jośe Estépar, Francesca Polverino, Farrah Kheradmand · 2025 · Communications Biology
Single-nucleus transcriptomics reveals the cellular immune responses to Candidatus Liberibacter asiaticus in rough lemon
Xu‐Bin Tian, Jinhuan Zhou, Jiaxin Li, Yayu Li, Changyong Zhou, Zhen Song · 2025 · Horticulture Research
Single-cell mapping of the glycocalyx in the adult human and mouse ocular surface
Rafael Martínez-Carrasco, Pablo Argüeso · 2025 · PNAS Nexus
Surface Marker Identification to Capture Live Circulating Tumor Cells in Metastatic Triple-Negative Breast Cancer
Bree M Lege, Khushali J. Patel, Brendan Panici, Ping Gong, Michael T. Lewis, M.J. Ellis, Chong-Hui Cheng · 2026 · Cancer Research Communications
Multi-Omics Integration Reveals the Genetic Mechanisms of Periodontitis and Predicts Therapeutic Drugs
Ruoyan Cao, Shuangshuang Xu, Junhao Xiang, Beilei Qu, Zichao Zhuang, Tengda Chu · 2026 · International Dental Journal
Characterization of dUTPase expression in mouse postnatal development and adult neurogenesis
Nikolett T. Nagy, Nóra Hádinger, Otília Tóth, Gergely Attila Rácz, Tímea Pintér, Zoltán Gál, Martin Urbán, Elen Gócza, László Hiripi, László Acsády et al. · 2024 · Scientific Reports
Transcriptomic Plasticity of Human Alveolar Macrophages Revealed by Single-Cell RNA Sequencing Following Drug Exposure: Implications for Therapeutic Development
Penny Groves, Levi Hockey, Brendan O’Sullivan, Lai-Ying Zhang, Zherui Xiong, Quan Hoang Nguyen, Maxine E. Tan, Viviana P. Lutzky, Rohan A. Davis, Daniel Charles Chambers et al. · 2025 · International Journal of Molecular Sciences
Optimized protocol for the multiomics processing of cryopreserved human kidney tissue
Sydney Elisabeth Gies, Sonja Hänzelmann, Dominik Kylies, Moritz Lassé, Simon Lagies, Fabian Hausmann, Robin Khatri, Nikolay Zolotarev, Manuela Poets, Tianran Zhang et al. · 2024 · American Journal of Physiology-Renal Physiology
Single-Cell RNA Profiling of Ocular Adnexal Sebaceous Carcinoma Reveals a Complex Tumor Microenvironment and Identifies New Biomarkers
Michelle G. Zhang, Ryan A. Gallo, Charissa H. Tan, Matthew Camacho, Sohaib Fasih‐Ahmad, Acadia H.M. Moeyersoms, Yoseph Sayegh, Sander R. Dubovy, Daniel Pelaez, Andrew J. Rong · 2024 · American Journal of Ophthalmology
Deep skin fibroblast-mediated macrophage recruitment supports acute wound healing
Veronica M. Amuso, MaryEllen R. Haas, Paula O. Cooper, Ranojoy Chatterjee, Sana Hafiz, Shatha Salameh, Chiraag Gohel, Miguel F. Mazumder, Violet Josephson, Khatereh Khorsandi et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Independent effects of testosterone, estradiol, and sex chromosomes on gene expression in immune cells of trans- and cisgender individuals
Rebecca M. Harris, Troy W. Whitfield, Laura V. Blanton, Helen Skaletsky, Kai Blumen, Phoebe Hyland, Em McDermott, Kiana Summers, Jennifer F. Hughes, Emily K. Jackson et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Persistent Increased Plasmacytoid Dendritic Cells and Inflammation in People With HIV Years After Tuberculosis
Maureen M. Ward, Paul Zumbo, Yvetot Joseph, Alexandra Apollon, Alicia Alonso, Doron Betel, Daniel W. Fitzgerald, Jean William Pape, Kathryn Margaret Dupnik · 2025 · The Journal of Infectious Diseases
In-silico discovery of druggable molecular signatures that drive dengue fever to severe dengue fever highlighting common pathogenesis through single-cell RNA-Seq analysis
Md. Al Noman, Abdul Latif, Md. Foysal Ahmed, Md. Shariful Islam, Md. Al Amin Pappu, Md. Sanoar Hossain, Md. Bayazid Hossen, Tooba Noor, Mohammad Manir Hossain Mollah, Md. Hadiul Kabir et al. · 2025 · Scientific Reports
γδ T17 Cells Regulate the Acute Antiviral Response of NK Cells in HSV-1–Infected Corneas
Rachel R. Rodenberg, Domenico Spadafora, Steffani Fitzpatrick, Grant T. Daly, Robert N. Lausch, Robert A. Barrington · 2024 · Investigative Ophthalmology & Visual Science
Single-cell immunopathology of recurrent acute generalized exanthematous pustulosis associated with vancomycin
Eric Milan Mukherjee, Andrew Gibson, Matthew Steven Krantz, Rama Gangula, Amy M. Palubinsky, Alan S. Boyd, Jeffrey P. Zwerner, Anna K. Dewan, Nontaya Nakkam, Katherine C. Konvinse et al. · 2025 · Journal of Allergy and Clinical Immunology Global
Application of single cell multiomics points to changes in chromatin accessibility near calcitonin receptor like receptor and a possible role for adrenomedullin in the post-shock lung
Brandon E. Armstead, Chung Sunny Lee, Yaping Chen, Runping Zhao, Chun‐Shiang Chung, Alger M. Fredericks, Sean F. Monaghan, Alfred Ayala · 2023 · Frontiers in Medicine
Single-cell RNA sequencing reveals the transcriptional heterogeneity of Tbx18-positive cardiac cells during heart development
Xianglin Long, Jiangjun Wei, Qinghua Fang, Xin Hiu Yuan, Jianlin Du · 2024 · Functional & Integrative Genomics
Fate-resolved gene regulatory signatures of individual B lymphocytes in the early stages of Epstein-Barr Virus infection
Elliott Daniel SoRelle, Joanne Dai, Nicolás M. Reinoso-Vizcaíno, Ashley Perkins Barry, Cliburn C. W. Chan, Micah A. Luftig · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
spinDrop: a droplet microfluidic platform to maximise single-cell sequencing information content
Joachim De Jonghe, Tomasz S. Kamiński, David B. Morse, Marcin Tabaka, Anna L. Ellermann, Timo N. Kohler, Gianluca Amadei, Charlotte E. Handford, Gregory M. Findlay, Magdalena Zernicka‐Goetz et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Pseudospatial transcriptional gradient analysis of hypothalamic ependymal cells: towards a new tanycyte classification
M. Brunner, D. Lopez-Rodriguez, Andrea Messina, Bernard Thorens, Federico Andrea Santoni, Fanny Langlet · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Mitochondrial reverse electron transport in myeloid cells perpetuates neuroinflammation
Luca Peruzzotti‐Jametti, C.M. Willis, Regan Hamel, Grzegorz Krzak, Julie A. Reisz, Hiran A. Prag, Vin‐Cent Wu, Y. Xiang, Aletta M.R. van den Bosch, Alexandra M. Nicaise et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
The Workflow for Computational Analysis of Single-cell RNA-sequencing Data
Sung-Hun Woo, Byung Chul Jung · 2024 · Korean Journal of Clinical Laboratory Science
Forensic Genomic Analysis Determines That RaTG13 Was Likely Generated from a Bat Mating Plug
Steven E. Massey · 2024 · Microbiology Research
Characterizing immune biomarkers and effector CD8+ T-cell exhaustion in pancreatic adenocarcinoma via single-cell RNA sequencing profiling
Rawaa AlChalabi, Raghda S. Makia, Semaa Abdulrahman Shaban, Ahmed AbdulJabbar Suleiman · 2025 · Exploration of Immunology
SIV infection induces alterations in gene expression and loss of interneurons in Rhesus Macaque frontal cortex during early systemic infection
Richard C. Crist, Samar Nasser Chehimi, Saurabh S. Divakaran, Michael J. Montague, Sébastien Tremblay, Noah Snyder‐Mackler, Martin O. Bohlen, Kenneth L. Chiou, Trisha M. Zintel, Lauren J. N. Brent et al. · 2025 · Translational Psychiatry
BCL6 , DUSP3 , and IL6R Are Identified as Shared Druggable Immune‐Regulatory Axis in Atrial Fibrillation and Atherosclerosis Through Integrative In Silico and In Vitro Analysis
Haotian Zheng, Linxin Yang, Pengli Zhu, Yazhou Lin · 2025 · Human Mutation
Spotsweeper-py: spatially-aware quality control metrics for spatial omics data in the Python ecosystem
Xingyi Chen, Michael S. Totty, Stephanie C. Hicks · 2026 · F1000Research
Deciphering the toxicological mechanism of airway allergic diseases caused by dioctyl terephthalate: a composite study
Zhiqiang Zhang, You-Wei Bao, Hongyou Wang, Jingyang Li, Heng-kun Wang, Xinyue Yang, Qi Chen, Jing Wu, Xin-Hua Zhu · 2026 · Frontiers in Toxicology
Characterization of Mitochondrial Double-Stranded RNA Levels in Non–Small Cell Lung Carcinoma
Matthew R. Krieger, Sandy Che-Eun S. Lee, Ting Fu, Maya Cielo Cornejo, Kevin L. He, Ryan Howe, Vanessa Saldivar, Angela L. Zhang, Guillaume Chanfreau, Michael A. Teitell et al. · 2026 · Cancer Research Communications
Machine learning-driven development of a novel unfolded protein response-related gene signature for predicting lung adenocarcinoma patient prognosis
Rui Jiao, ChunXue Wu, T Zhang, Hanyu Yan, Weidong He, Zi Wang, Xiaolong Yan · 2026 · BMC Cancer
Analytical Methods and Application of Single-Cell and Single-Nucleus Transcriptomics in the Study of Ischemic Stroke
Changqing Mu, Yuchuan Ding, Alexander Weiss, Sydni Rosenfeld, Fengwu Li, Xiaokun Geng · 2026 · Biomolecules
Single-cell transcriptomics reveals transcriptional diversity of sea cucumber perivisceral fluid coelomocytes
Noé Wambreuse, Arnaud Lavergne, Laurence Fiévez, Fabrice Bureau, Libin Zhang, Beini Deng, Guillaume Caulier, Igor Eeckhaut, Jérôme Delroisse · 2026 · BMC Genomics
SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data
Darisia Moonsamy, Nikki L. Gentle · 2022 · F1000Research
A Reproducible and Dynamic Workflow for Analysis and Annotation of scRNA-Seq Data
Nader Aryamanesh · 2022 · Methods in molecular biology
Single-Cell RNA-Seq Data Clustering: Highlighting Computational Challenges and Considerations
Mohamad Nossier, Sherin M. Moussa, Nagwa Lotfy Badr · 2023 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
A Bayesian nonparametric method for jointly clustering multiple spatial transcriptomic datasets and simultaneous gene selection
Donald Turner, Yang Ni · 2025 · Scientific Reports
Identification of a CD138-Negative Therapy-Resistant Subpopulation in Multiple Myeloma with Vulnerability to Splicing Factor Inhibition
Takahiro Kamiya, Masahiko Ajiro, Motohiko Oshima, Shuhei Koide, Yaeko Nakajima‐Takagi, Kazumasa Aoyama, Akiho Tsuchiya, Satoshi Kaito, Naoki Itokawa, Ryoji Ito et al. · 2025 · Blood Cancer Discovery
Fibroblast and myeloid cells with high mitochondrial RNA content represent biologically significant populations within the OA synovium
Wesley Tran, Garth Blackler, Rebecca Luo, C. Thomas Appleton, Matthew William Grol · 2025 · Osteoarthritis and Cartilage
Enrichment of Neural Crest Cells by Antibody Labeling and Flow Cytometry for Single‐Cell Transcriptomics in a Lizard
Robin Pranter, Cédric Patthey, Nathalie Feiner · 2026 · Evolution & Development
De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data
Arthur Dondi, Nico Borgsmüller, Pedro Ferreira, Brian J. Haas, Francis Jacob, Viola A Heinzelmann-Schwarz, Niko Beerenwinkel · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Long-term, cell type-specific effects of prenatal stress on dorsal striatum and relevant behaviors in mice
Maya M. Evans, Benjamin Wen Qing Hing, Matthew A. Weber, Sara V. Maurer, Ahmed I. Baig, Grace S. Kim, Samantha L. Anema, Rhett M. Ellerbroek, Kartik Sivakumar, Jacob J. Michaelson et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
Single-cell transcriptome reveals a testis-specific expression profile of TCEA in human spermatogenesis
Saran Pankaew, Pratchaya Pramoj Na Ayutthaya · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
FACT-mediated maintenance of chromatin integrity during transcription is essential for mammalian stem cell viability
Imon Goswami, Poorva Sandlesh, Aimee B. Stablewski, Ilya Toshkov, Alfiya F. Safina, Mikhail D. Magnitov, Jianmin Wang, Katerina V. Gurova · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Survey of elliptical galaxies at 6 cm. Report No. 1972-15
R. D. Ekers, Jennifer A. Ekers · 1972 · OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)
GIP Receptor Agonism Attenuates GLP-1 Receptor Agonist Induced Nausea and Emesis in Preclinical Models
Tito Borner, Caroline E. Geisler, Samantha M. Fortin, Richard Cosgrove, Jorge Alsina‐Fernandez, Mridula Dogra, Sarah A. Doebley, Marcos J. Sanchez-Navarro, Rosa M. Leon, Jane Gaisinsky et al. · 2021
Single-Cell RNAseq Data QC and Preprocessing
Martina Olivero, Raffaele Calogero · 2022 · Methods in molecular biology
Data from Meta-Analysis of Human Cancer Single-Cell RNA-Seq Datasets Using the IMMUcan Database
Jordi Camps, Floriane Noël, Robin Liechti, Lucile Massenet-Regad, Sidwell Rigade, Lou Götz, Caroline Hoffmann, Elise Amblard, Mélissa Saichi, Mahmoud M. Ibrahim et al. · 2023
Sinalização BMP e modulação da matriz extracelular durante a embriogênese óptica
Cecília Gallottini de Magalhães · 2023
Resident Synovial Macrophages in Synovial Fluid: Implications for Immunoregulation in Infectious and Inflammatory Arthritis
Karen I. Cyndari, Breanna M. Scorza, Zeb Ralph Zacharias, Leela Strand, Kurayi G. Mahachi, Juan Marcos Oviedo, Lisa C. Gibbs, Danielle Pessôa-Pereira, Graham Ausdal, Dylan Hendricks et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
The Elusive S Cells: Reevaluating Enteroendocrine Cell Classification
Martin Klingenspor, Franc Hysenaj, Michael Lauber, Andrea Bast‐Habersbrunner, Markus List · 2023 · Research Square
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Daniel Osorio, Parastoo Shahrouzi, Xavier Tekpli, Vessela Nedelcheva Kristensen, Marieke L. Kuijjer · 2025 · eLife
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Daniel Osorio, Parastoo Shahrouzi, Xavier Tekpli, Vessela Nedelcheva Kristensen, Marieke L. Kuijjer · 2025 · eLife
How to view the female reproductive tract through single-cell looking glasses
Jaime Llera-Oyola, Raúl Pérez-Moraga, Marcos Parras, Beatriz Rosón · 2025 · American Journal of Obstetrics and Gynecology
Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures
Daniel Osorio, Parastoo Shahrouzi, Xavier Tekpli, Vessela Nedelcheva Kristensen, Marieke L. Kuijjer · 2025 · eLife
Hematopoietic Proliferation is Orchestrated by the Sequential and Lineage-Specific Activation of Cyclin D, Cyclin E and CDKN Sub-Modules within the G1/S Network
Andrea Hänel, Aya Abdelsalam, Sylvain Tollis · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
cellSight: Characterizing dynamics of cells using single-cell RNA-sequencing
Ranojoy Chatterjee, Chiraag Gohel, Ali Reza Taheriyoun, Brett A Shook, Ali Rahnavard · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
Rethinking mitochondria in scRNAseq analysis
Brian Kim, Alexander J. Knights · 2025 · Osteoarthritis and Cartilage
Mathematical analysis of G1/S sub-networks in hematopoietic proliferation: Sequential and lineage-specific activation
Andrea Hänel, Aya Abdelsalam, Sylvain Tollis · 2025 · iScience
Additional file 8 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 14 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 5 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 10 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 6 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 11 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 12 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 4 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 7 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 13 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Yuya Sato, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 9 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 1 of CRISPR/Cas9-based depletion of 16S ribosomal RNA improves library complexity of single-cell RNA-sequencing in planarians
Wang, Kuang-Tse, Carolyn E. Adler · 2024 · Figshare
Additional file 1 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 15 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 2 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare
Additional file 3 of Integrative single-cell RNA-seq analysis of vascularized cerebral organoids
Sato, Yuya, Toru Asahi, Kataoka, Kosuke · 2024 · Figshare