The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
Open accessAbstract
TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to produce longer, more complete consensus sequences. The system can run on multi-CPU architectures including SMP and PVM. Availability: http://www.tigr.org/tdb/tgi/software/ Contact: johnq@tigr.org; johnq@tigr.org * To whom correspondence should be addressed.
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Citations
Cites
CAP3: A DNA Sequence Assembly Program
Huang, X., & Madan, A. (1999) · Genome Research · doi:10.1101/gr.9.9.868 · Cited by 5,261
Self-citation
Cited by
Chevreux, B., Pfisterer, T., Drescher, B., Driesel, A. J., Müller, W. E. G., Wetter, T., & Suhai, S. (2004) · Genome Research · doi:10.1101/gr.1917404 · Cited by 1,050
Argout, X., Salse, J., Aury, J.-M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., et al. (2011) · Nature Genetics · doi:10.1038/ng.736 · Cited by 746
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads
Wang, Z., Hobson, N., Galindo, L., Zhu, S., Shi, D., McDill, J., Yang, L., Hawkins, S., Neutelings, G., Datla, R., et al. (2012) · The Plant Journal · doi:10.1111/j.1365-313x.2012.05093.x · Cited by 448
Wang, X.-W., Luan, J.-B., Li, J.-M., Bao, Y.-Y., Zhang, C.-X., & Liu, S.-S. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-400 · Cited by 390
“To obtained distinct gene sequences, the scaffolds were clustered using TGI Clustering tools [24].”
MethodGene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
Pasquier, J., Cabau, C., Nguyen, T., Jouanno, E., Severac, D., Braasch, I., Journot, L., Pontarotti, P., Klopp, C., Postlethwait, J. H., et al. (2016) · BMC Genomics · doi:10.1186/s12864-016-2709-z · Cited by 365
Metadata
- Authors
- Pertea, G., Huang, X., Liang, F., Antonescu, V., Sultana, R., Karamycheva, S., Lee, Y., White, J., Cheung, F., Parvizi, B., Tsai, J., & Quackenbush, J.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-03-22
- Volume
- 19
- Issue
- 5
- Pages
- 651-652
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2101972919
- Cited by
- 1,902
- References
- 1
- FWCI
- 12.01
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Pertea, G., Huang, X., Liang, F., Antonescu, V., Sultana, R., Karamycheva, S., Lee, Y., White, J., Cheung, F., Parvizi, B., Tsai, J., & Quackenbush, J. (2003). TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics. https://doi.org/10.1093/bioinformatics/btg034
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