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ClustalW-MPI: ClustalW analysis using distributed and parallel computing
Open accessAbstract
Summary: ClustalW is a tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is a distributed and parallel implementation of ClustalW. All three steps have been parallelized to reduce the execution time. The software uses a message-passing library called MPI (Message Passing Interface) and runs on distributed workstation clusters as well as on traditional parallel computers. Availability:The source codes are written in ISO C and are available at http://www.bii.a-star.edu.sg/software/clustalw-mpi/. An open source implementations of MPI http://www-unix.mcs.anl.gov/mpi/. Contact: kuobin@bii.a-star.edu.sg
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Cited by
Parallelization of the MAFFT multiple sequence alignment program
Katoh, K., & Toh, H. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq224 · Cited by 928
Towards the human intestinal microbiota phylogenetic core
Tap, J., Mondot, S., Levenez, F., Pelletier, E., Caron, C., Furet, J., Ugarte, E., Muñoz‐Tamayo, R., Paslier, D. L. E., Nalin, R., et al. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01982.x · Cited by 927
Magwanga, R. O., Lu, P., Kirungu, J. N., Lu, H., Wang, X., Cai, X., Zhou, Z., Zhang, Z., Salih, H., Wang, K., et al. (2018) · BMC Genetics · doi:10.1186/s12863-017-0596-1 · Cited by 285
Kim, H.-G., Ahn, J.-W., Kurth, I., Ullmann, R., Kim, H.-T., Kulharya, A., Ha, K.-S., Itokawa, Y., Meliciani, I., Wenzel, W., et al. (2010) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2010.08.018 · Cited by 195
Dingle, K. E., Didelot, X., Ansari, M. A., Eyre, D. W., Vaughan, A., Griffiths, D., Ip, C. L. C., Batty, E. M., Golubchik, T., Bowden, R., et al. (2013) · The Journal of Infectious Diseases · doi:10.1093/infdis/jis734 · Cited by 104
Metadata
- Authors
- Li, K.-B.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-08-12
- Volume
- 19
- Issue
- 12
- Pages
- 1585-1586
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2155518645
- Cited by
- 468
- References
- 4
- FWCI
- 5.25
- Type
- journal article
- Language
- en
- Open access
- bronze
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