The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Characterizing gene sets with FuncAssociate
Open accessAbstract
Summary: FuncAssociate is a web-based tool to help researchers use Gene Ontology attributes to characterize large sets of genes derived from experiment. Distinguishing features of FuncAssociate include the ability to handle ranked input lists, and a Monte Carlo simulation approach that is more appropriate to determine significance than other methods, such as Bonferroni or S̆idák p-value correction. FuncAssociate currently supports 10 organisms (Vibrio cholerae, Shewanella oneidensis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Caenorhaebditis elegans, Drosophila melanogaster, Mus musculus, Rattus norvegicus and Homo sapiens). Availability: FuncAssociate is freely accessible at http://llama.med.harvard.edu/Software.html. Source code (in Perl and C) is freely available to academic users ‘as is’.
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Agresti, A. (2002) · Wiley Series in Probability and Statistics · doi:10.1002/0471249688 · Cited by 6,746
Cited by
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625
Huang, D. W., Sherman, B. T., & Lempicki, R. A. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn923 · Cited by 14,108
Boyle, E. I., Weng, S., Gollub, J., Jin, H., Botstein, D., Cherry, J. M., & Sherlock, G. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth456 · Cited by 2,067
g:Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments
Reimand, J., Kull, M., Peterson, H., Hansen, J., & Vilo, J. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm226 · Cited by 1,545
Ontological analysis of gene expression data: current tools, limitations, and open problems
Khatri, P., & Drăghici, S. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti565 · Cited by 854
Metadata
- Authors
- Berriz, G. F., King, O. D., Bryant, B., Sander, C., & Roth, F. P.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-12-12
- Volume
- 19
- Issue
- 18
- Pages
- 2502-2504
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2151763757
- Cited by
- 473
- References
- 1
- FWCI
- 6.00
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Berriz, G. F., King, O. D., Bryant, B., Sander, C., & Roth, F. P. (2003). Characterizing gene sets with FuncAssociate. Bioinformatics. https://doi.org/10.1093/bioinformatics/btg363
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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