Web-based kinetic modelling using JWS Online

Olivier, Brett G., Snoep, Jacky L.·2004·Bioinformatics

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  3. Zooming in: from multi-omics to single function in hyperthermophilic archaeon Sulfolobus solfataricus
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  4. Status and Challenges of Reproducibility in Computational Systems and Synthetic Biology
    Kiri Choi, Jonathan R. Karr, H. Sauro · 2021 · Elsevier eBooks
  5. Automated Execution of Simulation Studies in Systems Medicine Using SED-ML and COMBINE Archive
    Anand Rampadarath, David Phillip Nickerson · 2020 · Elsevier eBooks
  6. ShinyCOPASI: a web-based exploratory interface for COPASI models
    Abhishekh Gupta, Pedro Mendes · 2021 · arXiv (Cornell University)
  7. Theoretical biology
    Christoph Wierling · 2010 · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver
  8. Computational Tools and Resources for Integrative Modeling in Systems Biology
    Christoph Wierling, Hendrik Hache · 2013 · Springer eBooks
  9. Dynamic publication media with the COPASI R Connector (CoRC)
    Johanna C.J. Daas, Jonas D. Förster, Jürgen Pahle · 2022 · Mathematical Biosciences
  10. Kinetic Modeling
    Neil Swainston · 2004 · Dictionary of Bioinformatics and Computational Biology
  11. JWS Online
    Franco B. du Preez · 2013 · Springer eBooks
  12. Faculty Opinions recommendation of Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.
    Herbert M. Sauro · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  13. A New Visualization and Analysis Method for a Convolved Representation of Mass Computational Experiments with Biological Models
    Alexandra Igorevna Klimenko, Diana A. Vorobeva, Sergey Alexandrovich Lashin · 2023 · Mathematics
  14. Laboratory information systems for research management in biology
    Aleksey M. Mukhin, Казанцев Федор Владимирович, Sergey Alexandrovich Lashin · 2023 · Vavilov Journal of Genetics and Breeding
  15. Concepts and Tools to Model GRCs, and Some Essential CCM Pathways in Living Cells 1. Generalities
    Gheorghe C. Maria · 2023 · Current Trends in Biomedical Engineering & Biosciences
  16. Perturbation-response analysis of in silico metabolic dynamics in nonlinear regime: Hard-coded responsiveness in the cofactors and network sparsity
    Yusuke Himeoka, Chikara Furusawa · 2024 · eLife
  17. RTF: an R package for modelling time course data
    Eva Brombacher, Clemens Kreutz · 2024 · Bioinformatics
  18. Data Formats for Systems Biology, Systems Medicine and Computational Modeling
    Martin Golebiewski, Gerhard Mayer · 2024 · Elsevier eBooks
  19. Perturbation-response analysis of in silico metabolic dynamics in nonlinear regime: Hard-coded responsiveness in the cofactors and network sparsity
    Yusuke Himeoka, Chikara Furusawa · 2025 · eLife
  20. SBMLtoOdin and Menelmacar: interactive visualisation of systems biology models for expert and non-expert audiences
    Leonie Johanna Lorenz, Antoine Andréoletti, Tung V. N. Nguyen, Henning Hermjakob, Richard G. FitzJohn, Rahuman S. Malik‐Sheriff, John A. Lees · 2025 · Bioinformatics
  21. Network Discovery in Equilibrium-state and Dynamic Data: Applications to Phosphoproteomics and Kinetics.
    Yan Zhang · 2012 · Deep Blue (University of Michigan)
  22. Evolution et modélisation de processus biologiques : application à la régulation de la compétence naturelle pour la transformation génétique bactérienne chez les streptocoques
    Mathias Weyder · 2017
  23. The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
    Dario Eltzner, Lea Morschel, Andreas Dräger · 2026 · Current Opinion in Systems Biology
  24. The in-silico optimization of a fed-batch reactor for ethanol production by using several algorithms
    Gheorghe C. Maria, Laura Renea, Daniela Gheorghe, Crina Muscalu · 2025 · Revue Roumaine de Chimie
  25. FAIRsharing record for: Minimal Information Required In the Annotation of Models
    FAIRsharing Team · 2015 · FAIRsharing.org
  26. FAIRsharing record for: COMODI
    FAIRsharing Team · 2018 · FAIRsharing.org
  27. Databases, Standards, and Modeling Platforms for Systems Biology
    Juergen Eilsa, Elena Herzoga, Baerbel Felder, Christian Lawerenza, Roland Eils · 2013 · Elsevier eBooks
  28. PySUNDIALS : Providing python bindings to a robust suite of mathematical tools for computational systems biology
    James Gilmour Dominy · 2009 · SUNScholar (Stellenbosch University)