The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Web-based kinetic modelling using JWS Online
Abstract
Summary: JWS Online is a repository of kinetic models, describing biological systems, which can be interactively run and interrogated over the Internet. It is implemented using a client–server strategy where the clients, in the form of web browser based Java applets, act as a graphical interface to the model servers, which perform the required numerical computations. Availability: The JWS Online website is publicly accessible at http://jjj.biochem.sun.ac.za/ with mirrors at http://www.jjj.bio.vu.nl/ and http://jjj.vbi.vt.edu/
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In the citing paper
“Model repositories such as BioModels [10, 11], JWS Online [12], or the Physiome Model Repository 2 (PMR2) [13] provide different means to retrieve and use simulation models.”
From Relating simulation studies by provenance—Developing a family of Wnt signaling models (2021) · cites this paper as [12]
Citations
Cites
KACSER, H., & Ja, B. (1973) · PubMed · Cited by 1,455
Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3
Mendes, P. (1997) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(97)01103-1 · Cited by 574
Roles of triosephosphate isomerase and aerobic metabolism in Trypanosoma brucei
Helfert, S., Estévez, A. M., Bakker, B. M., Michels, P. A. M., & CLAYTON, C. E. (2001) · Biochemical Journal · doi:10.1042/0264-6021:3570117 · Cited by 148
Metabolic control analysis in a nutshell
Hofmeyr, J. S., Hucka, M., Morohashi, M., & Kitano, H. (2001) · Cited by 65
Cited by
Sorted by citations
Cell-signalling dynamics in time and space
Kholodenko, B. N. (2006) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1838 · Cited by 1,347
Le Novere, N. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj092 · Cited by 762
Reactome: a knowledge base of biologic pathways and processes
Västrik, I., D’Eustachio, P., Schmidt, E., Geeta, J.-T., Gopinath, G., Croft, D. W., de Bono, B., Gillespie, M. E., Jassal, B., Lewis, S., et al. (2007) · Genome biology · doi:10.1186/gb-2007-8-3-r39 · Cited by 662
Minimum information requested in the annotation of biochemical models (MIRIAM)
Novère, N. L., Finney, A., Hucka, M., Bhalla, U. S., Campagne, F., Collado-Vides, J., Crampin, E. J., Halstead, M., Klipp, E., Mendes, P., et al. (2005) · Nature Biotechnology · doi:10.1038/nbt1156 · Cited by 622
Self-citationLi, C., Donizelli, M., Rodríguez, N., Dharuri, H. K., Endler, L., Chelliah, V., Li, L., He, E., Henry, A., Stefan, M. I., et al. (2010) · BMC Systems Biology · doi:10.1186/1752-0509-4-92 · Cited by 561
Self-citation
Metadata
- Authors
- Olivier, B. G., & Snoep, J. L.
- Affiliations
- Stellenbosch University (ZA)
- Corresponding author
- Olivier, Brett G.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-04-08
- Volume
- 20
- Issue
- 13
- Pages
- 2143-2144
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2160751597
- Cited by
- 326
- References
- 4
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 9 · 2023: 14 · 2022: 7 · 2021: 11 · 2020: 11 · 2019: 10 · 2018: 10 · 2017: 9 · 2016: 17 · 2015: 18 · 2014: 19 · 2013: 25 · 2012: 23
- FWCI
- 6.74
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Bioinformatics (publishedVersion)
- PubMed (publishedVersion)
- VU Research Portal (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Social Sciences › Decision Sciences › Information Systems and Management › Scientific Computing and Data Management
- Keywords
- kinetic modeling, web-based simulation, client-server architecture, Java applets, biological systems modelling, model repository, numerical computation
- MeSH terms
- Cell Physiological Phenomena, Computer Simulation, Kinetics, Metabolism, Models, Biological, Online Systems, User-Computer Interface, Signal Transduction, Databases, Factual, Information Storage and Retrieval, Internet
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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