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Taverna: a tool for the composition and enactment of bioinformatics workflows

Open access
Oinn, Tom, Addis, Matthew, Ferris, Justin, Marvin, Darren, Senger, Martin, Greenwood, Mark, Carver, Tim, Glover, Kevin, Pocock, Matthew R., Wipat, Anil, Li, Peter·2004·Bioinformatics

Abstract

Motivation: In silico experiments in bioinformatics involve the co-ordinated use of computational tools and information repositories. A growing number of these resources are being made available with programmatic access in the form of Web services. Bioinformatics scientists will need to orchestrate these Web services in workflows as part of their analyses. Results: The Taverna project has developed a tool for the composition and enactment of bioinformatics workflows for the life sciences community. The tool includes a workbench application which provides a graphical user interface for the composition of workflows. These workflows are written in a new language called the simple conceptual unified flow language (Scufl), where by each step within a workflow represents one atomic task. Two examples are used to illustrate the ease by which in silico experiments can be represented as Scufl workflows using the workbench application. Availability: The Taverna workflow system is available as open source and can be downloaded with example Scufl workflows from http://taverna.sourceforge.net

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Metadata

Authors
Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, M., Carver, T., Glover, K., Pocock, M. R., Wipat, A., & Li, P.
Venue
Bioinformatics
Published
2004-06-17
Volume
20
Issue
17
Pages
3045-3054
ISSN
  • 1367-4803 (ISSN-L)
  • 1367-4811
OpenAlex
W2168103533
Cited by
1,602
References
2
FWCI
309.94
Type
journal article
Language
en
Open access
bronze

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CoChat. (2026). Citation check: Taverna: a tool for the composition and enactment of bioinformatics workflows. https://app.cochat.ai/papers/10.1093/bioinformatics/bth361
The paper
Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, M., Carver, T., Glover, K., Pocock, M. R., Wipat, A., & Li, P. (2004). Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics. https://doi.org/10.1093/bioinformatics/bth361

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