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MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
Abstract
Summary: New additional methods are presented for processing and visualizing mass spectrometry based molecular profile data, implemented as part of the recently introduced MZmine software. They include new features and extensions such as support for mzXML data format, capability to perform batch processing for large number of files, support for parallel processing, new methods for calculating peak areas using post-alignment peak picking algorithm and implementation of Sammon's mapping and curvilinear distance analysis for data visualization and exploratory analysis. Availability: MZmine is available under GNU Public license from Contact: matej.oresic@vtt.fi
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Cited by
Cox, J., Hein, M. Y., Luber, C. A., Paron, I., Nagaraj, N., & Mann, M. (2014) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m113.031591 · Cited by 5,180
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis
Tsugawa, H., Cajka, T., Kind, T., Ma, Y., Higgins, B., Ikeda, K., Kanazawa, M., VanderGheynst, J., Fiehn, O., & Arita, M. (2015) · Nature Methods · doi:10.1038/nmeth.3393 · Cited by 3,397
The Human Serum Metabolome (HUSERMET) Consortium, Dunn, W. B., Broadhurst, D., Begley, P., Zelena, E., Francis-McIntyre, S., Anderson, N., Brown, M., Knowles, J. D., Halsall, A., et al. (2011) · Nature Protocols · doi:10.1038/nprot.2011.335 · Cited by 3,294
Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis
Xia, J., & Wishart, D. S. (2016) · Current Protocols in Bioinformatics · doi:10.1002/cpbi.11 · Cited by 1,544
Integrative analysis of multimodal mass spectrometry data in MZmine 3
Schmid, R., Heuckeroth, S., Korf, A., Smirnov, A., Myers, O., Dyrlund, T. S., Bushuiev, R., Murray, K. J., Hoffmann, N., Lu, M., et al. (2023) · Nature Biotechnology · doi:10.1038/s41587-023-01690-2 · Cited by 1,241
Self-citation
Metadata
- Authors
- Katajamaa, M., Miettinen, J., & Orešič, M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-01-10
- Volume
- 22
- Issue
- 5
- Pages
- 634-636
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2114754207
- Cited by
- 831
- References
- 0
- FWCI
- 16.45
- Type
- journal article
- Language
- en
- Open access
- closed
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- Katajamaa, M., Miettinen, J., & Orešič, M. (2006). MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics. https://doi.org/10.1093/bioinformatics/btk039
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