The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Using GOstats to test gene lists for GO term association
Open accessAbstract
Motivation: Functional analyses based on the association of Gene Ontology (GO) terms to genes in a selected gene list are useful bioinformatic tools and the GOstats package has been widely used to perform such computations. In this paper we report significant improvements and extensions such as support for conditional testing. Results: We discuss the capabilities of GOstats, a Bioconductor package written in R, that allows users to test GO terms for over or under-representation using either a classical hypergeometric test or a conditional hypergeometric that uses the relationships among GO terms to decorrelate the results. Availability: GOstats is available as an R package from the Bioconductor project: Contact: sfalcon@fhcrc.org
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Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
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Stuart, T., Butler, A., Hoffman, P., Hafemeister, C., Papalexi, E., Mauck, W. M., Hao, Y., Stoeckius, M., Smibert, P., & Satija, R. (2019) · Cell · doi:10.1016/j.cell.2019.05.031 · Cited by 15,453
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Choudhary, C., Kumar, C., Gnad, F., Nielsen, M. L., Rehman, M., Walther, T. C., Olsen, J. V., & Mann, M. (2009) · Science · doi:10.1126/science.1175371 · Cited by 4,040
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Metadata
- Authors
- Falcon, S., & Gentleman, R.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-11-10
- Volume
- 23
- Issue
- 2
- Pages
- 257-258
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2138255346
- Cited by
- 2,015
- References
- 1
- FWCI
- 13.63
- Type
- journal article
- Language
- en
- Open access
- hybrid
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