The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
LibSBML: an API Library for SBML
Open accessAbstract
Summary: LibSBML is an application programming interface library for reading, writing, manipulating and validating content expressed in the Systems Biology Markup Language (SBML) format. It is written in ISO C and C++, provides language bindings for Common Lisp, Java, Python, Perl, MATLAB and Octave, and includes many features that facilitate adoption and use of both SBML and the library. Developers can embed libSBML in their applications, saving themselves the work of implementing their own SBML parsing, manipulation and validation software. Availability: LibSBML 3 was released in August 2007. Source code, binaries and documentation are freely available under LGPL open-source terms from http://sbml.org/software/libsbml. Contact: sbml-team@caltech.edu
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Citations
Cites
(1994) · Cited by 21,711
Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., et al. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg015 · Cited by 3,060
Self-citationMinimum information requested in the annotation of biochemical models (MIRIAM)
Novère, N. L., Finney, A., Hucka, M., Bhalla, U. S., Campagne, F., Collado-Vides, J., Crampin, E. J., Halstead, M., Klipp, E., Mendes, P., et al. (2005) · Nature Biotechnology · doi:10.1038/nbt1156 · Cited by 622
Self-citationSystem Modeling in Cellular Biology: From Concepts to Nuts and Bolts
Szállási, Z., Stelling, J., & Periwal, V. (2007) · Medical Entomology and Zoology · Cited by 236
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model DefinitionsPreprint
Hucka, M., Finney, A., Hoops, S., Keating, S., & Novère, N. G. L. (2007) · Nature Precedings · doi:10.1038/npre.2007.58.1 · Cited by 111
Self-citationAdding semantics in kinetics models of biochemical pathways
Novère, N. G. L., Courtot, M., & Laibe, C. (2007) · Cited by 37
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model DefinitionsPreprint
Hucka, M., Hoops, S., Keating, S., Novère, N. G. L., Sahle, S., & Wilkinson, D. J. (2008) · Nature Precedings · doi:10.1038/npre.2008.2715.1 · Cited by 32
Self-citationSoftware Infrastructure for Effective Communication and Reuse of Computational Models
Finney, A., Hucka, M., Bornstein, B., Keating, S., Shapiro, B. E., Matthews, J., Kovitz, B., Schilstra, M. J., Funahashi, A., Doyle, J. C., et al. (2006) · The MIT Press eBooks · doi:10.7551/mitpress/6604.003.0022 · Cited by 22
Self-citationSoftware Infrastructure for Effective Communication and Reuse of Computational Models
Finney, A., Hucka, M., Bornstein, B., et al. (2006) · The MIT Press eBooks · doi:10.7551/mitpress/9780262195485.003.0017 · Cited by 12
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The Reactome pathway Knowledgebase
Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1351 · Cited by 5,605
The Reactome pathway knowledgebase
Croft, D., Mundo, A. F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M. R., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1102 · Cited by 1,889
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
Schellenberger, J., Que, R., Fleming, R. M. T., Thiele, I., Orth, J. D., Feist, A. M., Zielinski, D. C., Bordbar, A., Lewis, N. E., Rahmanian, S., et al. (2011) · Nature Protocols · doi:10.1038/nprot.2011.308 · Cited by 1,835
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ebrahim, A., Lerman, J. A., Palsson, B. O., & Hyduke, D. R. (2013) · BMC Systems Biology · doi:10.1186/1752-0509-7-74 · Cited by 1,378
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Heirendt, L., Arreckx, S., Pfau, T., Mendoza, S. N., Richelle, A., Heinken, A., Haraldsdóttir, H. S., Wachowiak, J., Keating, S., Vlasov, V., et al. (2019) · Nature Protocols · doi:10.1038/s41596-018-0098-2 · Cited by 1,222
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Metadata
- Authors
- Bornstein, B. J., Keating, S. M., Jouraku, A., & Hucka, M.
- Affiliations
- California Institute of Technology (US)
- Corresponding author
- Keating, Sarah M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-02-05
- Volume
- 24
- Issue
- 6
- Pages
- 880-881
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- PMC
- PMC2517632
- OpenAlex
- W2134221731
- Cited by
- 373
- References
- 9
- Citations by year
- 2026: 11 · 2025: 10 · 2024: 14 · 2023: 17 · 2022: 13 · 2021: 24 · 2020: 22 · 2019: 15 · 2018: 20 · 2017: 21 · 2016: 23 · 2015: 19 · 2014: 25 · 2013: 32 · 2012: 21
- FWCI
- 11.64
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Bioinformatics (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- CaltechAUTHORS (California Institute of Technology) (submittedVersion)
- Funders
- Ministry of Education, Culture, Sports, Science and Technology
- National Institutes of Health
- Defense Advanced Research Projects Agency
- Biotechnology and Biological Sciences Research Council
- National Institute of General Medical Sciences (R01GM077671, R01GM070923)
- Exploratory Research for Advanced Technology
- Army Research Office
- Institute for Collaborative Biotechnologies
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Social Sciences › Decision Sciences › Information Systems and Management › Scientific Computing and Data Management
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Keywords
- libSBML, SBML, application programming interfaces, software library, language bindings, open source software
- MeSH terms
- Algorithms, Computer Simulation, Models, Biological, Programming Languages, Software, User-Computer Interface, Signal Transduction, Proteome, Systems Biology
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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