mapDamage: testing for damage patterns in ancient DNA sequences

Ginolhac, Aurelien, Rasmussen, Morten, Gilbert, M. Thomas P., Willerslev, Eske, Orlando, Ludovic·2011·Bioinformatics
DOI 10.1093/bioinformatics/btr347

Cited by (363)

Items 201–300 of 363

  1. Solving the two-decades-old murder case through joint application of ZooMS and ancient DNA approaches
    Yang Xu, Naihui Wang, Shizhu Gao, Chunxiang Li, Pengcheng Ma, Shasha Yang, Hai Chang Jiang, Shoujin Shi, Yanhua Wu, Quanchao Zhang et al. · 2023 · International Journal of Legal Medicine
  2. Patagonian partnerships: the extinct Dusicyon avus and its interaction with prehistoric human communities
    Cinthia Carolina Abbona, Ophélie Lebrasseur, Francisco J. Prevosti, Eva Ailén Peralta, Lucio González Venanzi, Laurent Frantz, Greger Larson, Adolfo Fabian Gil, Gustavo Adolfo Neme · 2024 · Royal Society Open Science
  3. The kinship of two 12th Dynasty mummies revealed by ancient DNA sequencing
    Konstantina Drosou, Campbell Price, Terence A. Brown · 2017 · Journal of Archaeological Science Reports
  4. The Baigetuobie cemetery: New discovery and human genetic features of Andronovo community’s diffusion to the Eastern Tianshan Mountains (1800–1500 BC)
    Jiangsong Zhu, Jian Ma, Fan Zhang, Yinqiu Cui, Marcella Festa, Tongyuan Xi, Meng Ren, Yinchen Wang, Ben Li, Feixiang Huang · 2020 · The Holocene
  5. Application of palaeogenetic techniques to historic mollusc shells reveals phylogeographic structure in a New Zealand abalone
    Kerry Walton, Lachie Scarsbrook, Kieren J. Mitchell, Alexander J. F. Verry, Bruce A. Marshall, Nicolas J. Rawlence, Hamish G. Spencer · 2022 · Molecular Ecology Resources
  6. Population Genomic Analyses of DNA from Ancient Remains
    Torsten Günther · 2019 · Wiley eBooks
  7. Holocene deglaciation drove rapid genetic diversification of Atlantic walrus
    Emily J. Ruiz‐Puerta, Xénia Keighley, Sean P. A. Desjardins, Anne Birgitte Gotfredsen, Shyong En Pan, Bastiaan Star, Sanne Boessenkool, James H. Barrett, Morgan L. McCarthy, Liselotte Wesley Andersen et al. · 2023 · Proceedings of the Royal Society B Biological Sciences
  8. Female sex bias in Iberian megalithic societies through bioarchaeology, aDNA and proteomics
    Marta Díaz-Zorita Bonilla, Gonzalo Aranda Jiménez, Margarita Sánchez Romero, Rosa Fregel, Katharina Rebay‐Salisbury, Fabian Kanz, Miriam Vílchez Suárez, Sonia Robles Carrasco, Paula Becerra Fuello, Alejandra C. Ordóñez et al. · 2024 · Scientific Reports
  9. Greenland Norse walrus exploitation deep into the Arctic
    Emily J. Ruiz‐Puerta, Greer Jarrett, Morgan L. McCarthy, Shyong En Pan, Xénia Keighley, Magie Aiken, Giulia Zampirolo, Maarten J. J. E. Loonen, Anne Birgitte Gotfredsen, Lesley R. Howse et al. · 2024 · Science Advances
  10. Validation of qPCR Methods for the Detection of Mycobacterium in New World Animal Reservoirs
    Genevieve Housman, Joanna Malukiewicz, Vanner Boere, Adriana Daudt Grativol, Luiz Cézar Machado Pereira, Ita de Oliveira e Silva, Carlos Ramon Ruiz-Miranda, Richard W. Truman, Anne C. Stone · 2015 · PLoS neglected tropical diseases
  11. A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives
    Michael V. Westbury, Ross Barnett, Marcela Sandoval‐Velasco, Graham Gower, Filipe Garrett Vieira, Marc de Manuel, Anders Johannes Hansen, Nobuyuki Yamaguchi, Lars Werdelin, Tomàs Marquès‐Bonet et al. · 2021 · Open Research Europe
  12. Comparative analysis of DNA extraction protocols for ancient soft tissue museum samples
    Ming Zhang, 中国科学院古脊椎动物与古人类研究所，中国科学院脊椎动物演化与人类起源重点实验室，北京 100044，中国, Peng Cao, Qingyan Dai, Yongqiang Wang, Xiaotian Feng, Hongru Wang, Hong Wu, Albert Min‐Shan Ko, Xiaowei Mao et al. · 2021 · 动物学研究
  13. Genomic exploration of the journey of Plasmodium vivax in Latin America
    Margaux J. M. Lefebvre, Fanny Degrugillier, Céline Arnathau, Gustavo Adolfo Fontecha, Óscar Noya, Sandrine Houzé, Carlo Severini, Bruno Pradines, Antoine Berry, Jean‐François Trape et al. · 2025 · PLoS Pathogens
  14. A glimpse of the paleome in endolithic microbial communities
    Carl‐Eric Wegner, Raphaela Stahl, Irina M. Velsko, Alexander Hübner, Zandra Fagernäs, Christina Warinner, Robert G. Lehmann, Thomas Ritschel, Kai Uwe Totsche, Kirsten Küsel · 2023 · Microbiome
  15. Ancient DNA in Zooarchaeology: New Methods, New Questions and Settling Old Debates in Pacific Commensal Studies
    Elizabeth A. Matisoo-Smith · 2017 · Springer eBooks
  16. Bioarchaeological perspective on the expansion of Transeurasian languages in Neolithic Amur River basin
    Yinqiu Cui, Fan Zhang, Pengcheng Ma, Linyuan Fan, Chao Ning, Quanchao Zhang, Wei Zhang, Lixin Wang, Martine Robbeets · 2020 · Evolutionary Human Sciences
  17. Detection of Ancient Viruses and Long-Term Viral Evolution
    Luca Nishimura, Naoko T. Fujito, Ryota Sugimoto, Ituro Inoue · 2022 · Viruses
  18. Evolutionary anthropology and genes: Investigating the genetics of human evolution from excavated skeletal remains
    Evilena Anastasiou, Piers D. Mitchell · 2013 · Gene
  19. Ancient genomes from the Tang Dynasty capital reveal the genetic legacy of trans-Eurasian communication at the eastern end of Silk Road
    Minglei Lv, Hao Ma, Rui Wang, Hui Li, Xiangyu Zhang, Wenbo Zhang, Yuding Zeng, Ziwei Qin, Hongbo Zhai, Yiqiang Lou et al. · 2024 · BMC Biology
  20. Neolithic genomes reveal long distance interactions in agropastoral border zone of Yan Mountain Region
    Daxuan Zhang, Bing Sun, Fajun Li, Xue Zhao, Zhanhu Zhao, Jun Li, Shizhu Gao, Yu Li, Qiankun Quan, N. E. Berdnikova et al. · 2025 · 中国科学通报：英文版
  21. Ancient DNA from the extinct New Zealand grayling ( Prototroctes oxyrhynchus ) reveals evidence for Miocene marine dispersal
    Lachie Scarsbrook, Kieren J. Mitchell, Matthew D. McGee, Gerard Patrick Closs, Nicolas J. Rawlence · 2022 · Zoological Journal of the Linnean Society
  22. Terrestrial Fauna and Hominin DNA from Sedimentary Archives
    Tyler J. Murchie, Charline Giguet‐Covex, Peter D. Heintzman, Viviane Slon, Yucheng Wang · 2023 · Developments in paleoenvironmental research
  23. Paleogenetic evidence of a Pyrenean Neolithic family: Kinship, physical appearance and biogeography multidisciplinary analysis
    Cláudia Gomes, Gerard Remolins, Ana Marı́a López-Parra, Juan Francisco Gibaja, Maria Fondevila, Flavio De Angelis, Virginia Veltre, M. Eulàlia Subirà, C. Baeza, Diana Carolina Cuenca Guerrero et al. · 2020 · Journal of Archaeological Science
  24. Conservation genomics and systematics of a near‐extinct island radiation
    Anna M. Kearns, Michael G. Campana, Beth Slikas, Lainie Berry, Takema Saitoh, Alice Cibois, Robert C. Fleischer · 2022 · Molecular Ecology
  25. Ancient RNA
    Oliver Smith, Marcus Thomas P. Gilbert · 2018 · Population genomics
  26. Museum Genomics Provide Evidence for Persistent Genetic Differentiation in a Threatened Seabird Species in the Western Atlantic
    Paige A. Byerly, R. Terry Chesser, Robert C. Fleischer, Nancy Rotzel McInerney, Natalia A. S. Przelomska, Paul L. Leberg · 2022 · Integrative and Comparative Biology
  27. The first reported case of the rare mitochondrial haplotype H4a1 in ancient Egypt
    Konstantina Drosou, Thomas C. Collin, Peter Freeman, Robert D. Loynes, Anthony John Freemont · 2020 · Scientific Reports
  28. DNA Sequencing in Cultural Heritage
    Stefania Vai, Martina Lari, David Caramelli · 2016 · Topics in Current Chemistry
  29. Middle Pleistocene Cave Bear Genome Calibrates the Evolutionary History of Palaearctic Bears
    Axel Barlow, Johanna L. A. Paijmans, Federica Alberti, Boris Gasparyan, Guy Bar‐Oz, Ron Pinhasi, Irina V. Foronova, A. Yu. Puzachenko, Martina Pacher, Love Dalén et al. · 2020 · SSRN Electronic Journal
  30. Mitochondrial genomes of Pleistocene megafauna retrieved from recent sediment layers of two Siberian lakes
    Peter Andreas Seeber, Laura Batke, Yury A. Dvornikov, Alexandra Schmidt, Yi Wang, Kathleen R. Stoof‐Leichsenring, Katie Moon, Samuel H. Vohr, Beth Shapiro, Laura S. Epp · 2024 · eLife
  31. Sedimentary DNA insights into Holocene Adélie penguin (Pygoscelis adeliae) populations and ecology in the Ross Sea, Antarctica
    Jamie R. Wood, Chengran Zhou, Theresa L. Cole, Morgan Coleman, Dean P. Anderson, Phil O’B. Lyver, Shangjin Tan, Xueyan Xiang, Xinrui Long, Senyu Luo et al. · 2025 · Nature Communications
  32. A highly efficient scheme for library preparation from single-stranded DNA
    Fumihito Miura, Hideaki Kanzawa‐Kiriyama, Osamu Hisano, Miki Miura, Yukiko Shibata, Noboru Adachi, Tsuneo Kakuda, Ken‐ichi Shinoda, Takashi Ito · 2023 · Scientific Reports
  33. ANÁLISIS DEL GENOMA MITOCONDRIAL DE DOS INDIVIDUOS INHUMADOS EN EL SITIO ARQUEOLÓGICO CG14E01 “ISLA LARGA” (ROCHA, URUGUAY)
    Gonzalo Figueiro, Leonel Cabrera Pérez, John Lindo, Elizabeth K. Mallott, Amanda C. Owings, Ripan Singh Malhi, Mónica Sans · 2016 · Revista Argentina de Antropología Biológica
  34. An open-sourced bioinformatic pipeline for the processing of Next-Generation Sequencing derived nucleotide reads: Identification and authentication of ancient metagenomic DNA
    Thomas C. Collin, Konstantina Drosou, J. O'Riordan, Tengiz Meshveliani, Ron Pinhasi, Robin N. M. Feeney · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  35. Perinatal burials at pre‐Hispanic noncemetery sites in Gran Canaria: Tophet, infanticide, or natural mortality?
    Verónica Alberto Barroso, Teresa Delgado‐Darias, Alejandra C. Ordóñez, Javier G. Serrano, Rosa Fregel, Javier Velasco Vázquez · 2021 · International Journal of Osteoarchaeology
  36. Extraction and high-throughput sequencing of oak heartwood DNA: Assessing the feasibility of genome-wide DNA methylation profiling
    Federico Rossi, Alessandro Crnjar, Federico Comitani, Rodrigo Pedro Feliciano, Leonie Johanna Jahn, George Malim, Laura Southgate, Emily Kay, Rebecca J. Oakey, Richard J. A. Buggs et al. · 2021 · PLoS ONE
  37. Tracing microbial communities associated with archaeological human samples in Latvia, 7–11th centuries AD
    Jānis Ķimsis, Alise Pokšāne, Alisa Kazarina, Antonija Vilcāne, Elīna Pētersone-Gordina, Pawel Zayakin, Guntis Gerhards, Renāte Ranka · 2023 · Environmental Microbiology Reports
  38. Reduction of genetic diversity in ‘Alalā (Hawaiian crow; Corvus hawaiiensis ) between the late 1800s and the late 1900s
    Geneviève Blanchet, M. Renee Bellinger, Anna M. Kearns, Nandadevi Córtes‐Rodríguez, Bryce M. Masuda, Michael G. Campana, Christian Rutz, Robert C. Fleischer, Jolene T. Sutton · 2023 · Journal of Heredity
  39. Using sedimentary ancient DNA in coastal and marine contexts to explore past human–environmental interactions in Australia
    Matthew A. Campbell, Ingrid A. K. Ward, Alison J. Blyth, Morten E. Allentoft · 2025 · Philosophical Transactions of the Royal Society B Biological Sciences
  40. Imputation of Ancient Whole Genome Sus scrofa DNA Introduces Biases Toward Main Population Components in the Reference Panel
    Jolijn A. M. Erven, Canan Çakırlar, Daniel G. Bradley, Daan C. M. Raemaekers, Ole Madsen · 2022 · Frontiers in Genetics
  41. Mitochondrial genomes of Pleistocene megafauna retrieved from recent sediment layers of two Siberian lakes
    Peter Andreas Seeber, Laura Batke, Yury A. Dvornikov, Alexandra Schmidt, Yi Wang, Kathleen R. Stoof‐Leichsenring, Katie Moon, Samuel H. Vohr, Beth Shapiro, Laura S. Epp · 2023 · eLife
  42. Archaeological Wool Textiles: A Window into Ancient Sheep Genetics?
    Luise Ørsted Brandt, Morten E. Allentoft · 2019 · Cambridge University Press eBooks
  43. Identification of ancient viruses from metagenomic data of the Jomon people
    Luca Nishimura, Ryota Sugimoto, Jun G. Inoue, Hirofumi Nakaoka, Hideaki Kanzawa‐Kiriyama, Ken‐ichi Shinoda, Ituro Inoue · 2020 · Journal of Human Genetics
  44. Relative performance of two DNA extraction and library preparation methods on archaeological human teeth samples
    Marcela Sandoval‐Velasco, Inge K. C. Lundstrøm, Nathan Wales, María C. Ávila‐Arcos, Hannes Schroeder, Marcus Thomas P. Gilbert · 2017 · STAR Science & Technology of Archaeological Research
  45. Density separation of petrous bone powders for optimized ancient DNA yields
    Daniel Fernandes, Kendra A. Sirak, Olivia Cheronet, Mario Novak, Florian Brück, Evelyn Zelger, Alejandro Llanos-Lizcano, Anna Wagner, Anna Zettl, Kirsten Mandl et al. · 2023 · Genome Research
  46. Geographic origin, ancestry, and death circumstances at the Cornaux/Les Sauges Iron Age bridge, Switzerland
    Zita Laffranchi, Stefania Zingale, Lara Indra, Valentina Coia, Domingo C. Salazar‐García, Alice Paladin, Marc-Antoine Kaeser, Géraldine Delley, Sönke Szidat, Sandra Lösch et al. · 2024 · Scientific Reports
  47. Ancient DNA sheds light on the funerary practices of late Neolithic collective burial in southern France
    Ana Arzelier, Harmony De Belvalet, Marie‐Hélène Pemonge, Pauline Garberi, Didier Binder, Henri Duday, Marie‐France Deguilloux, Mélanie Pruvost · 2024 · Proceedings of the Royal Society B Biological Sciences
  48. Contrasting Genomic Diversity and Inbreeding Levels Among Two Closely Related Falcon Species With Overlapping Geographic Distributions
    Audrey M. Martin, Jeff A Johnson, Robert B. Berry, Matthew D. Carling, Carlos Martínez del Rio · 2024 · Molecular Ecology
  49. Screening great ape museum specimens for DNA viruses
    Michelle Hämmerle, Meriam Guellil, Lovro Trgovec-Greif, Olivia Cheronet, Susanna Sawyer, Irune Ruiz‐Gartzia, Esther Lizano, Aigerim Rymbekova, Pere Gelabert, Paolo Bernardi et al. · 2024 · Scientific Reports
  50. East and West admixture in eastern China of Tang Dynasty inferred from ancient human genomes
    Rui Wang, Wentao Liu, Yiting Wu, Hao Ma, Jing Lv, Haifeng He, Limin Qiu, Haodong Chen, Yongsheng Zhao, Bo Sun et al. · 2025 · Communications Biology
  51. A 14,000-year-old genome sheds light on the evolution and extinction of a Pleistocene vulture
    Per G. P. Ericson, Martin Irestedt, Dario Zuccon, Petter Larsson, Jean-Luc Tison, Steven D. Emslie, Anders Götherström, JULIAN PENDER HUME, Lars Werdelin, Yanhua Qu · 2022 · Communications Biology
  52. Proper authentication of ancient DNA is essential, yes; but so are undogmatic approaches
    Gary A. Toranzos, Tasha M. Santiago-Rodríguez, Raúl J. Cano, Gino Fornaciari · 2017 · FEMS Microbiology Ecology
  53. Archaeological Microbiology
    Laura Susan Weyrich, Vilma Pérez · 2023
  54. Palaeogenomic data from a Late Pleistocene coprolite clarifies the phylogenetic position of Sicilian cave hyena
    Giulio Catalano, Dawid A. Iurino, Alessandra Modi, Johanna L. A. Paijmans, Raffaele Sardella, Luca Sìneo, David Caramelli, Axel Barlow · 2024 · Quaternary Science Reviews
  55. Untangling the colonization history of the Australo-Pacific reed warblers, one of the world’s great island radiations
    Anna M. Kearns, Michael G. Campana, Beth Slikas, Lainie Berry, Takema Saitoh, Gary R. Graves, Alice Cibois, Robert C. Fleischer · 2024 · Evolution
  56. Revisiting the Briggs Ancient DNA Damage Model: A Fast Maximum Likelihood Method to Estimate Post‐Mortem Damage
    Lei Zhao, Rasmus Amund Henriksen, Abigail Daisy Ramsøe, Rasmus Nielsen, Thorfinn Sand Korneliussen · 2024 · Molecular Ecology Resources
  57. Ancient DNA Analysis of the Thulamela Remains: Deciphering the Migratory Patterns of a Southern African Population
    Molebogeng K. Bodiba, Maryna Steyn, Paulette Bloomer, Morongwa N. Mosothwane, Frank Jakobus Rühli, Abigail Bouwman · 2019 · Journal of African Archaeology
  58. Hunting for Pathogens
    Stephanie Marciniak · 2016 · Elsevier eBooks
  59. Exploring Fennoscandian agricultural history through genetic analysis of aged crop materials
    Maria Lundström · 2018 · Linköping studies in science and technology. Dissertations
  60. Library preparation method and DNA source influence endogenous DNA recovery from 100‐year‐old avian museum specimens
    Amie E. Settlecowski, Ben D. Marks, Joseph D. Manthey · 2023 · Ecology and Evolution
  61. Genomic palaeoparasitology traced the occurrence of Taenia asiatica in ancient Iran (Sassanid Empire, 2th cent. CE–6th cent. CE)
    Zeynab Askari, Frank Jakobus Rühli, Abigail Bouwman, Vahid Shariati, Saied Reza Naddaf, Domenico Otranto, Santiago Mas‐Coma, Mostafa Rezaeian, Nicole Boenke, Thomas R. Stöllner et al. · 2022 · Scientific Reports
  62. AuthentiCT: a model of ancient DNA damage to estimate the proportion of present-day DNA contamination
    Stéphane Peyrégne, Benjamin Marco Peter · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  63. Genome sequences of extant and extinct gibbons reveal their phylogeny, demographic history, and conservation status
    Sheng Wang, Zehui Chen, Ayun Luo, Xinran You, Andrew C. Kitchener, Xiaolong Tu, Mukesh Kumar Thakur, Govindhaswamy Umapathy, Songmei Hu, Tianen Zhang et al. · 2025 · Cell
  64. Ancient DNA from lentils (Lens culinaris) illuminates human - plant - culture interactions in the Canary Islands
    Jenny Hagenblad, Jacob Morales, Rosa Fregel, Pedro Henríquez-Valido, Matti Wiking Leino, Amelia Rodríguez-Rodríguez, Jonathan Santana · 2025 · Journal of Archaeological Science
  65. Forensic Validation of the 95K SNP Panel and the Parabon Fx Forensic Analysis Platform for Identification of US Military Unknowns Using Extended Kinship Inference
    Jacqueline Tyler Thomas, Courtney Cavagnino, Kimberly Sturk‐Andreaggi, Ellen McRae Greytak, Julie A. Demarest, Suzanne Barritt-Ross, Timothy P. McMahon, Charla K. Marshall · 2026 · Genes
  66. Targeted sequencing enhances detection of pangolin trafficking hotspots and dynamics of both domestic and global trade markets
    Sean Paul Heighton, Jérôme Murienne, Mukesh Kumar Thakur, Alain Didier Missoup, Wirdateti Wirdateti, Chabi Sylvestre Djagoun, Sery Gonedelé Bi, Gabriel Ngua Ayecaba, Brice Roxan Momboua, Flobert Njiokou et al. · 2026 · PLoS Biology
  67. Late Pleistocene polar bear genomes reveal the timing of allele fixation in key genes associated with Arctic adaptation
    Yulin Sun, Eline D. Lorenzen, Michael V. Westbury · 2024 · BMC Genomics
  68. Dokdo sea lion Zalophus japonicus genome reveals its evolutionary trajectory before extinction
    Jung Eun Kim, Asta Blažytė, Jae‐Pil Choi, Changjae Kim, Шарко Федор Сергеевич, Sungwon Jeon, Eun Mi Kim, Hawsun Sohn, Jong Hee Lee, Hyun Woo Kim et al. · 2025 · BMC Biology
  69. Análisis genético del individuo de Chan do Lindeiro: caracterización de su mitogenoma y situación de la muestra en el contexto paleogenético europeo
    Gloria González Fortes, Aurora Grandal‐d'Anglade, Juan Ramón Vidal Romaní, Michael Hofreiter · 2017 · Cadernos do Laboratorio Xeolóxico de Laxe: Revista de xeoloxía galega e do hercínico peninsular
  70. The history of ancient Japanese dogs revealed by mitogenomes
    Xiayire Xiaokaiti, Takao Sato, Kenji Kasai, Kenichi Machida, Kyomi Yamazaki, Naomitsu Yamaji, Hiroki Kikuchi, Jun Gojobori, Hitomi Hongo, Yohey Terai et al. · 2023 · Anthropological Science
  71. Application of NGS in maternal genome analysis in ancient human remains
    Muhammad Irfan, Khushbukhat Khan, Naila Khan · 2024 · Elsevier eBooks
  72. Mitochondrial genome of Neuryurus rudis (Xenarthra, Cingulata); contribution to phylogeny and origin of glyptodonts
    Luciano Brambilla, Damián Alberto Ibarra, María Carolina Barboza, Edgardo G. Bresso, Germán L. Rosano, Germán Pérez, Pablo Straccia, Rubén D Scian, Lucas R. Brun · 2024 · Gene
  73. Reconstructing the Genomic Diversity of a Widespread Sub-Saharan Bat (Pteropodidae: Eidolon helvum) Using Archival Museum Collections
    Brian O'Toole, Nancy B. Simmons, Evon R. Hekkala · 2020 · Acta Chiropterologica
  74. Genomic analysis of Irish bog butter
    Valeria Mattiangeli, Niall P. Cooke, Ros Ó Maoldúin, Maeve Sikora, Isabella Mulhall, Daniel G. Bradley, Matthew D. Teasdale · 2020 · Journal of Archaeological Science Reports
  75. An empirical evaluation of genotype imputation of ancient DNA
    Kristiina Ausmees, Federico Sánchez‐Quinto, Mattias Jakobsson, Carl Nettelblad · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  76. A Tomato Genome From The Italian Renaissance Provides Insights Into Columbian and Pre-Columbian Exchange Links And Domestication
    Rutger Aldo Vos, Tinde van Andel, Barbara Gravendeel, Vasia Kakakiou, Ewout Michels, Elio G. W. M. Schijlen, Anastasia Stefanaki · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  77. Revisiting the Briggs ancient DNA damage model: a fast regression method to estimate postmortem damage
    Lei Zhao, Rasmus Amund Henriksen, Abigail Daisy Ramsøe, Rasmus Nielsen, Thorfinn Sand Korneliussen · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  78. Ancient DNA insights into Neolithic bone-tool use on the Tibetan Plateau
    Linying Wang, Ting Li, Qing Wang, Yan Tong, Songtao Chen, Sijia Yuan, Yu Gao, Ruxue Liao, Shargan Wangdue, Xiaoyan Yang · 2025 · Journal of Archaeological Science
  79. AdDeam : a fast and scalable tool for estimating and clustering reference-level damage profiles
    Louis Kraft, Thorfinn Sand Korneliussen, Peter Wad Sackett, Gabriel Renaud · 2025 · Bioinformatics
  80. Ground squirrel coprolites preserve complex archives of ancient environmental DNA over 700,000 years
    Tyler J. Murchie, Scott L. Cocker, Sina Baleka, Nicola Alexandra Vogel, Libby Natola, Emil Karpinski, Diana Tirlea, McIntyre A. Barrera, Danielle Magann Grant, Evan Morien et al. · 2026 · Nature Communications
  81. Computational Approaches for Analyzing Ancient Genomes and Modern Metagenomes
    Eberhard Karls · 2013
  82. Mitochondrial genetic diversity and evolutionary history of Late Pleistocene woolly mammoths in Northeast China
    Zhicheng Du, Guilian Sheng, Jiaming Hu, Fancheng Xing, Siren Wang, Fuqiang Li, Bo Xiao, Shiwen Song, M.-H Zheng, Junxia Yuan et al. · 2024 · Chinese Science Bulletin (Chinese Version)
  83. Exchanging genes and goods: How ancient DNA can potentially illuminate complex mobility patterns in the Black Sea region
    Sterling Wright, Franceska-Cristina Știrbu · 2023 · Revista CICSA online Serie Nouă
  84. Historic dog Furs Unravel the Origin and Artificial Selection of Modern Nordic Lapphund and Elkhound dog Breeds
    Shi-Zhi Wang, Yan Yu, Malin Widlund, C.J. Qian, Liangliang Zhang, Shaojie Zhang, Zi-Mai Li, Peng Cao, Qingyan Dai, Xiaotian Feng et al. · 2024 · Molecular Biology and Evolution
  85. Evaluation of reported sediment samples from 20 Ma using a molecular phylogenetic approach: comment on Liu et al. (2017)
    Takahiro Segawa, Takahiro Yonezawa · 2020 · Environmental Microbiology
  86. Spatiotemporal fluctuations of population structure in the Americas revealed by a meta‐analysis of the first decade of archaeogenomes
    André Luiz Campelo dos Santos, Henry Sócrates Lavalle Sullasi, Ömer Gökçümen, John Lindo, Michael DeGiorgio · 2022 · American Journal of Biological Anthropology
  87. The Evolutionary History of the Extinct Baltic Sea Harp Seal Population
    Maiken Hemme Bro‐Jørgensen, Hans Ahlgren, Aikaterini Glykou, Emily J. Ruiz‐Puerta, Lembi Lõugas, Anne Birgitte Gotfredsen, Morten Tange Olsen, Kerstin Lidén · 2025 · Ecology and Evolution
  88. Sequencing of historical plastid genomes reveal exceptional genetic diversity in early domesticated rye plants
    Jovan Komluski, Sofia Filatova, Frank Schlütz, Benjamin Claaßen, Manfred Rösch, Ben Krause‐Kyora, Wiebke Kirleis, Eva H. Stukenbrock · 2025 · iScience
  89. Museomics and Salvaged Feathers Piece Together the Evolutionary History and Conservation Genomics of the Elusive, Critically Endangered Night Parrot ( Pezoporus occidentalis )
    Heng Lin Yeap, Gunjan Pandey, Jeremy J. Austin, John Graham Oakeshott, Christopher M. Hardy, Stephen Murphy, Nicholas P. Leseberg, Allan H. Burbidge, Kenny J. Travouillon, Leo Joseph et al. · 2025 · Molecular Ecology
  90. Social Stratification Without Genetic Differentiation at the Xisima Site in the Late Shang Dynasty
    Jiaxin Tang, Rui Wang, Qingli Wei, Haifeng He, Chen Deng, Le Tao, Xiaolu Mao, Hao Ma, Xinyi Wang, Xinyue Zou et al. · 2025 · Molecular Biology and Evolution
  91. Ancient genomes from the Qing Dynasty reveal unbroken genetic continuity in China's Central Plains
    Yawei Zhou, Yukai Lin, Hao Ma, Rui Wang, Hongbo Zhai, Ziwei Qin, Yuding Zeng, Yiqiang Lou, Yu Xu, Haodong Chen et al. · 2025 · Molecular Biology and Evolution
  92. Multidisciplinary exploration of ancient atherosclerosis: Paleo-genomic and paleo-nutritional analysis of a 13th century artificial mummy in China
    Bangyan Wang, Rui Wang, Duo Zheng, Baoshuai Zhang, Yu Shao, Jianxue Xiong, Panxin Du, Zixi Jiang, Lobsang Dargye, Edward Allen et al. · 2026 · Journal of genetics and genomics/Journal of Genetics and Genomics
  93. DNA extracted from boiled archival fish bones yields high‐quality whole‐genome sequencing data
    Jingyao Niu, Anti Vasemägi, María‐Eugenia López, Lilian Pukk, Magnus Huss, Anna Gårdmark · 2026 · Journal of Fish Biology
  94. Ancient East Asian dog lineage is revealed by genome of ancient Korean dogs
    Hyeongcheol Kim, Suyeon Kim, A-reum Yu, Eunji Song, Sol Kim, Taiji Miyazaki, Yohey Terai · 2026 · PLoS ONE
  95. Legacies and new advances in quaternary hunter-gatherer archaeology of the Americas: A brief review
    Ian Beggen, Abby S. Baka, Bethany Potter · 2026 · Quaternary International
  96. Historical and contemporary butterfly genomes reveal genetic erosion in response to land-use intensification
    Nathalie Matthey-de-l’Endroit, Daniel Berner · 2026 · iScience
  97. Commensal Models in Island Archaeology
    Catherine Collins, Anna L. Gosling, Elizabeth A. Matisoo-Smith · 2024 · Oxford University Press eBooks
  98. Maintenance of mitogenomic diversity despite recent population decline in a critically endangered Aotearoa New Zealand bird
    Natalie J. Forsdick, Alana M. Alexander, Liz Brown, Richard F. Maloney, Tammy E. Steeves, Michael Knapp · 2024 · Conservation Genetics
  99. Archaeological dental calculus: A rich bioarchive for exploring Classical Antiquity through ancient DNA methods
    Sterling Wright · 2025 · Journal of Archaeological Science Reports
  100. Born in a brothel: new perspectives on childcare with medieval sex workers
    Maxime Poulain, Céline Bon, Jessica Palmer · 2025 · Archaeological and Anthropological Sciences