SynaptomeDB: an ontology-based knowledgebase for synaptic genes

Pirooznia, Mehdi, Wang, Tao, Avramopoulos, Dimitrios, Valle, David, Thomas, Gareth, Huganir, Richard L., Goes, Fernando S., Potash, James B. +1 more·2012·Bioinformatics

Cited by (125)

Items 101–125 of 125

  1. Full-length isoform transcriptome of developing human brain provides new insights into autism
    Kevin Chau, Pan Zhang, Jorge Urresti, Megha Amar, Akula Bala Pramod, Jiaye Chen, Amy Thomas, Roser Corominas, Guan Ning Lin, Lilia M. Iakoucheva · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  2. Impairment of methylglyoxal detoxification systems causes mitochondrial dysfunction and schizophrenia-like behavioral deficits
    Kazuya Toriumi, Stefano Berto, Shin Koike, Noriyoshi Usui, Takashi Dan, Kazuhiro Suzuki, Mitsuhiro Miyashita, Yasue Horiuchi, Akane Yoshikawa, Yuki Sugaya et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  3. A rare variant in D-amino acid oxidase implicates NMDA receptor signaling and cerebellar gene networks in risk for bipolar disorder
    Naushaba Hasin, Lace Marie Riggs, Tatyana Shekhtman, Justin Ashworth, Robert Lease, Rediet T. Oshone, Elizabeth Humphries, Judith Ann Badner, Pippa A. Thompson, David C. Glahn et al. · 2021 · medRxiv
  4. Regulome-wide association study identifies enhancer properties associated with risk for schizophrenia
    Alex M. Casella, Carlo Colantuoni, Seth A. Ament · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  5. Microglial TNFα orchestrates brain phosphorylation during the sleep period and controls homeostatic sleep
    Maria J. Pinto, Léa Cottin, Florent Dingli, Victor Laigle, Luís F. Ribeiro, Antoine Triller, Fiona J Henderson, Damarys Loew, Véronique Fabre, Alain Bessis · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  6. Neuron-specific protein expression at striatal excitatory synapses
    Yizhi Wang, Tamara Perez‐Rosello, Dalton James Surmeier, Jeffrey N. Savas · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  7. Label-Free LC-MS/MS Comparative Analysis of Protein S-Nitrosome in Synaptosomes from Wild-Type and APP Transgenic Mice
    Monika Zaręba-Kozioł, Maciej M. Lalowski, Aleksandra Wysłouch‐Cieszyńska · 2016 · Neuromethods
  8. Gene Regulation by Nuclear Calcium and Its Antagonism by NMDAR/TRPM4 Signaling
    Priit Pruunsild, C. Peter Bengtson, Jing Yan, Hilmar Bading, Anna M. Hagenston · 2024 · Springer eBooks
  9. Methods for genome interpretation: causal gene discovery and personal phenotype prediction
    Yunching Chen · 2014
  10. A weighted burden test using logistic regression for integrated analysis of sequence variants, copy number variants and polygenic risk score
    David Curtis · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  11. Creatine Deficiency Syndromes: A Clinical, Molecular and Functional Approach
    Joseph Ndika · 2014 · Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam)
  12. Local regulation and function of importin-β1 in hippocampal neurons during transcription-dependent plasticity
    Yan Jun Lee · 2021
  13. A preliminary study on the cistrome of human postsynaptic density from an evolutionary and network-based perspective
    Zsofia E. Kalman, Zoltán Gáspári · 2021 · bioRxiv
  14. Analyses of GWAS and sub-threshold loci lead to the discovery of dendrite development and morphology dysfunction underlying schizophrenia genetic risk
    Rui Chen, Quan Wang, Chongchong Xu, Qiang Wei, Hai Yang, James S. Sutcliffe, Yi Wei Jiang, Ying Ji, Feixiong Cheng, Edwin H. Cook et al. · 2021 · Research Square
  15. Integration of Functional Genomic Data in Genetic Analysis
    Siying Chen · 2021
  16. PSINDB: A comprehensive database of postsynaptic protein-protein interactions
    Zsofia E. Kalman, D. Dudola, Bálint Mészáros, Zoltán Gáspári, László Dobson · 2021 · bioRxiv
  17. Leveraging Gene-Level Prediction as Informative Covariate in Hypothesis Weighting Improves Power for Rare Variant Association Studies
    Ying Ji, Rui Chen, Quan Wang, Qiang Wei, Ran Tao, Bingshan Li · 2022 · Genes
  18. Early-childhood inflammation blunts the transcriptional maturation of cerebellar neurons
    Seth A. Ament, Marcia Cortes-Gutierrez, Brian R. Herb, Evelina Mocci, Carlo Colantuoni, Margaret M. McCarthy · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  19. Brain Injury Knowledge Ontology (BIKO) for traumatic brain injury: Formalizing concepts and methods used in translational traumatic brain injury research
    M. Surles-Zeigler, Troy Sincomb, C. Dixon, Fahim T. Imam, Tom Gillespie, J. Grethe, A. Ferguson, Maryann E. Martone · 2023 · bioRxiv
  20. Mechanism of electroconvulsive therapy in schizophrenia: a bioinformatics analysis study of RNA-seq data
    Tingting Wang, Minglan Yu, Xiaochu Gu, Xuemei Liang, Ping Wang, Wanhong Peng, Dongmei Liu, Dechao Chen, Chaohua Huang, Youguo Tan et al. · 2024 · Psychiatric Genetics
  21. Proteomic insights into the macaque insular parcellation based on structural connectivity gradients
    Xinyi Liu, Long Cao, Zongchang Du, Yue Julia Cui, Kadharbatcha S. Saleem, Yuanchao Zhang, Yuheng Lu, Baogui Zhang, Yanyan Liu, Xiaoxiao Hou et al. · 2025 · Cerebral Cortex
  22. L'apport de la génétique dans la nosographie en psychiatrie : l’exemple des troubles bipolaires et de la schizophrénie
    Elisa Courtois · 2020
  23. Etude du développement cortical à travers la caractérisation d'un modèle murin d'autisme et l'inférence des interactions cellulaires par séquençage en cellules uniques
    Rémi Mathieu · 2022
  24. The role of transcription factor Neurod2 in cortex development and its implications in neurodevelopmental disorders
    Karen Runge · 2022 · theses.fr (ABES)
  25. Exploring atypical spatial-functional coupling in adolescent autism spectrum disorder: insights from neurodevelopment and transcriptomic architecture
    Jun Pan, Heng Zhang, Yiran Zhai, Jiang Zhang, Hanbin Deng · 2026 · Frontiers in Neuroscience