COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
Liu, Binghang, Yuan, Jianying, Yiu, Siu-Ming, Li, Zhenyu, Xie, Yinlong, Chen, Yanxiang, Shi, Yujian, Zhang, Hao +3 more·2012·Bioinformatics
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- BigFiRSt: A Software Program Using Big Data Technique for Mining Simple Sequence Repeats From Large-Scale Sequencing DataJin-Xiang Chen, Fuyi Li, Miao Wang, Jun‐Long Li, Tatiana T. Marquez‐Lago, André Leier, Jerico Revote, Shuqin Li, Quanzhong Liu, Jiangning Song · 2022 · Frontiers in Big Data
- Determination of Nucleopolyhedrovirus’ Taxonomic PositionYu‐Shin Nai, Yu‐Feng Huang, Tzu-Han Chen, Kuo‐Ping Chiu, Chung‐Hsiung Wang · 2017 · InTech eBooks
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- DUDE-Seq: Fast, flexible, and robust denoising of nucleotide sequencesByunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman · 2015 · arXiv (Cornell University)
- IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing dataWei Zhang, Jia Ju, Yong Zhou, Teng Xiong, Mengyao Wang, Chaohui Li, Shixin Lu, Zefeng Lu, Liya Lin, Xiao Liu et al. · 2023 · Briefings in Bioinformatics
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- MeFiT: Merging and Filtering Tool for Illumina Paired-End Reads for 16S rRNA Amplicon SequencingHardik I. Parikh, Vishal N. Kopardé, Bradley, Steven P., Gregory A. Buck, Nihar U. Sheth · 2015 · arXiv (Cornell University)
- orthoCapture: Facilitating Gene Capture Probe Design for Non-Model SpeciesM. Elise Lauterbur · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Transcriptome-based identification of small RNA in plants: The need for robust prediction algorithmsSayak Ganguli, Pankaj Kumar Singh, Amita Pal · 2020 · Elsevier eBooks
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- Additional file 1 of CAREx: context-aware read extension of paired-end sequencing dataFelix Kallenborn, Schmidt Bertil · 2024 · Figshare
- Microbial community structures are associated with medicinal bioactive compound accumulation in Drynaria roosii Nakaike across rock and tree habitatsBo Wang, Fuli-Gong, Chunjiang-Huang, Jingzhong-Chen, Pengjie-He, Hongyu Chen, Wenyan-Cui, Qingwen-Sun · 2026 · Rhizosphere
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- A bacterial pangenome association study identifies a role for polyamine metabolism and alkaline tolerance in middle ear infectionsJocelyn A. Hammond, Rachel L. Ehrlich, Ariel Gonzalez, Begoña Euba, Kevin M. Raible, Jill M. Lawrence, Ari B. Gordon, Evangeline Williams, Mary C. Marino, Jason Limbo et al. · 2026 · PLoS Pathogens