The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
<tt>VariantAnnotation</tt> : a <tt>Bioconductor</tt> package for exploration and annotation of genetic variants
Open accessAbstract
Summary: VariantAnnotation is an R / Bioconductor package for the exploration and annotation of genetic variants. Capabilities exist for reading, writing and filtering variant call format (VCF) files. VariantAnnotation allows ready access to additional R / Bioconductor facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. Availability and implementation: This package is implemented in R and available for download at the Bioconductor Web site ( http://bioconductor.org/packages/2.13/bioc/html/ VariantAnnotation .html ). The package contains extensive help pages for individual functions and a ‘vignette’ outlining typical work flows; it is made available under the open source ‘Artistic-2.0’ license. Version 1.9.38 was used in this article. Contact: vobencha@fhcrc.org
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An integrated map of genetic variation from 1,092 human genomes
The 1000 Genomes Project Consortium (2012) · Nature · doi:10.1038/nature11632 · Cited by 7,711
Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
Drmanac, R., Sparks, A. B., Callow, M. J., Halpern, A. L., Burns, N. L., Kermani, B. G., Carnevali, P., Nazarenko, I., Nilsen, G. B., Yeung, G., et al. (2010) · Science · doi:10.1126/science.1181498 · Cited by 1,212
Cited by
Common genetic associations between age-related diseases
Dönertaş, H. M., Fabian, D. K., Fuentealba, M., Partridge, L., & Thornton, J. M. (2021) · Nature Aging · doi:10.1038/s43587-021-00051-5 · Cited by 346
GPNMB confers risk for Parkinson’s disease through interaction with α-synuclein
Diaz-Ortiz, M. E., Seo, Y., Posavi, M., Carceles Cordon, M., Clark, E., Jain, N., Charan, R., Gallagher, M. D., Unger, T. L., Amari, N., et al. (2022) · Science · doi:10.1126/science.abk0637 · Cited by 158
Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila
Ciabrelli, F., Comoglio, F., Fellous, S., Bonev, B., Ninova, M., Szabo, Q., Xuéreb, A., Klopp, C., Aravin, A., Paro, R., et al. (2017) · Nature Genetics · doi:10.1038/ng.3848 · Cited by 129
Coupling phenotypic persistence to DNA damage increases genetic diversity in severe stress
Yaakov, G., Lerner, D., Bentele, K., Steinberger, J., & Barkai, N. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-016-0016 · Cited by 45
Sex- and tissue-specific methylome changes in brains of mice perinatally exposed to lead
Sánchez-Martín, F. J., Lindquist, D. M., Landero-Figueroa, J., Zhang, X., Chen, J., Cecil, K. M., Medvedovic, M., & Puga, A. (2015) · NeuroToxicology · doi:10.1016/j.neuro.2014.12.004 · Cited by 43
Metadata
- Authors
- Obenchain, V., Lawrence, M., Carey, V., Gogarten, S., Shannon, P., & Morgan, M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-03-28
- Volume
- 30
- Issue
- 14
- Pages
- 2076-2078
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2136939537
- Cited by
- 335
- References
- 2
- FWCI
- 4.87
- Type
- journal article
- Language
- en
- Open access
- bronze
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- CoChat. (2026). Citation check: <tt>VariantAnnotation</tt> : a <tt>Bioconductor</tt> package for exploration and annotation of genetic variants. https://app.cochat.ai/papers/10.1093/bioinformatics/btu168
- The paper
- Obenchain, V., Lawrence, M., Carey, V., Gogarten, S., Shannon, P., & Morgan, M. (2014). <tt>VariantAnnotation</tt> : a <tt>Bioconductor</tt> package for exploration and annotation of genetic variants. Bioinformatics. https://doi.org/10.1093/bioinformatics/btu168
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