The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
Abstract
Summary: Phylogenetic comparative methods are essential for addressing evolutionary hypotheses with interspecific data. The scale and scope of such data have increased dramatically in the past few years. Many existing approaches are either computationally infeasible or inappropriate for data of this size. To address both of these problems, we present geiger v2.0 , a complete overhaul of the popular R package geiger . We have reimplemented existing methods with more efficient algorithms and have developed several new approaches for accomodating heterogeneous models and data types. Availability and implementation: This R package is available on the CRAN repository http://cran.r-project.org/web/packages/geiger/ . All source code is also available on github http://github.com/mwpennell/geiger-v2 . geiger v2.0 depends on the ape package. Contact: mwpennell@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online
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Cites
The global diversity of birds in space and time
Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K., & Mooers, A. O. (2012) · Nature · doi:10.1038/nature11631 · Cited by 3,934
Slater, G. J., Harmon, L. J., & Alfaro, M. E. (2012) · Evolution · doi:10.1111/j.1558-5646.2012.01723.x · Cited by 334
Self-citationPennell, M. W., & Harmon, L. J. (2013) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.12157 · Cited by 255
Self-citationEastman, J. M., Alfaro, M. E., Joyce, P., Hipp, A. L., & Harmon, L. J. (2011) · Evolution · doi:10.1111/j.1558-5646.2011.01401.x · Cited by 240
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Cited by
Phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
Revell, L. J. (2024) · PeerJ · doi:10.7717/peerj.16505 · Cited by 1,244
Detecting hidden diversification shifts in models of trait-dependent speciation and extinction
Beaulieu, J. M., & O’Meara, B. C. (2016) · Systematic Biology · doi:10.1093/sysbio/syw022 · Cited by 579
rotl: an R package to interact with the Open Tree of Life data
Michonneau, F., Brown, J. W., & Winter, D. J. (2016) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.12593 · Cited by 478
Self-citationMega-evolutionary dynamics of the adaptive radiation of birds
Cooney, C. R., Bright, J. A., Capp, E. J. R., Chira, A. M., Hughes, E. C., Moody, C. J. A., Nouri, L. O., Varley, Z. K., & Thomas, G. H. (2017) · Nature · doi:10.1038/nature21074 · Cited by 356
Pennell, M. W., & Harmon, L. J. (2013) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.12157 · Cited by 255
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Metadata
- Authors
- Pennell, M. W., Eastman, J. M., Slater, G. J., Brown, J. W., Uyeda, J. C., FitzJohn, R. G., Alfaro, M. E., & Harmon, L. J.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-04-10
- Volume
- 30
- Issue
- 15
- Pages
- 2216-2218
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2154518589
- Cited by
- 1,139
- References
- 4
- FWCI
- 19.81
- Type
- journal article
- Language
- en
- Open access
- closed
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- Pennell, M. W., Eastman, J. M., Slater, G. J., Brown, J. W., Uyeda, J. C., FitzJohn, R. G., Alfaro, M. E., & Harmon, L. J. (2014). geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees. Bioinformatics. https://doi.org/10.1093/bioinformatics/btu181
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