The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics
Open accessAbstract
Summary: The complex, rapidly evolving field of computational metabolomics calls for collaborative infrastructures where the large volume of new algorithms for data pre-processing, statistical analysis and annotation can be readily integrated whatever the language, evaluated on reference datasets and chained to build ad hoc workflows for users. We have developed Workflow4Metabolomics (W4M), the first fully open-source and collaborative online platform for computational metabolomics. W4M is a virtual research environment built upon the Galaxy web-based platform technology. It enables ergonomic integration, exchange and running of individual modules and workflows. Alternatively, the whole W4M framework and computational tools can be downloaded as a virtual machine for local installation. Availability and implementation: http://workflow4metabolomics.org homepage enables users to open a private account and access the infrastructure. W4M is developed and maintained by the French Bioinformatics Institute (IFB) and the French Metabolomics and Fluxomics Infrastructure (MetaboHUB). Contact : contact@workflow4metabolomics.org
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ProteoWizard: open source software for rapid proteomics tools development
Kessner, D., Chambers, M., Burke, R., Agus, D., & Mallick, P. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn323 · Cited by 2,024
Kind, T., & Fiehn, O. (2007) · BMC Bioinformatics · doi:10.1186/1471-2105-8-105 · Cited by 1,201
Human metabolic phenotype diversity and its association with diet and blood pressure
Holmes, E., Loo, R. L., Stamler, J., Bictash, M., Yap, I. K. S., Chan, Q., Ebbels, T., De Iorio, M., Brown, I. J., Veselkov, K. A., et al. (2008) · Nature · doi:10.1038/nature06882 · Cited by 1,054
Cited by
Pang, Z., Lu, Y., Zhou, G., Hui, F., Xu, L., Viau, C., Spigelman, A. F., MacDonald, P. E., Wishart, D. S., Li, S., et al. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkae253 · Cited by 2,291
Pang, Z., Zhou, G., Ewald, J., Chang, L., Hacariz, O., Basu, N., & Xia, J. (2022) · Nature Protocols · doi:10.1038/s41596-022-00710-w · Cited by 1,444
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data
Chong, J., & Xia, J. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty528 · Cited by 785
Di Guida, R., Engel, J., Allwood, J. W., Weber, R. J. M., Jones, M. R., Sommer, U., Viant, M. R., & Dunn, W. B. (2016) · Metabolomics · doi:10.1007/s11306-016-1030-9 · Cited by 371
Moreau, R., Clària, J., Aguilar, F., Fenaille, F., Lozano, J. J., Junot, C., Colsch, B., Caraceni, P., Trebicka, J., Pavesi, M., et al. (2020) · Journal of Hepatology · doi:10.1016/j.jhep.2019.11.009 · Cited by 353
Metadata
- Authors
- Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., Duperier, C., Tremblay-Franco, M., Martin, J.-F., Jacob, D., Goulitquer, S., Thévenot, E. A., & Caron, C.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-12-19
- Volume
- 31
- Issue
- 9
- Pages
- 1493-1495
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2149309843
- Cited by
- 500
- References
- 3
- FWCI
- 32.44
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Giacomoni, F., Le Corguillé, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., Duperier, C., Tremblay-Franco, M., Martin, J.-F., Jacob, D., Goulitquer, S., Thévenot, E. A., & Caron, C. (2015). Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics. Bioinformatics. https://doi.org/10.1093/bioinformatics/btu813
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