The DOI matches its Crossref record; 27 of the 29 references it cites were found in a registry or an index.
Relationship Between Mycobacterium tuberculosis Phylogenetic Lineage and Clinical Site of Tuberculosis
Abstract
BACKGROUND: Genotyping of Mycobacterium tuberculosis has revealed 4 major phylogenetic lineages with differential distribution worldwide. It is not clear whether different lineages are associated with different sites of infection (eg, pulmonary tuberculosis versus extrapulmonary tuberculosis). We sought to determine whether M. tuberculosis lineage is associated with the site of tuberculosis disease. METHODS: We conducted a cross-sectional analysis of all culture-confirmed cases of tuberculosis with routinely determined M. tuberculosis spoligotype-defined lineage reported to the US National Tuberculosis Surveillance System from 2004 through 2008. Odds ratios (ORs) were used to assess the relation between disease site and M. tuberculosis lineage, after adjustment for age, sex, human immunodeficiency virus infection status, region of birth, and race/ethnicity. RESULTS: Of 53972 reported culture-positive tuberculosis cases, 32000 (59.3%) were cases of M. tuberculosis that included complete spoligotype-based data on lineage. Of these, 23844 (74.5%) were exclusively pulmonary, 5085 (15.9%) were exclusively extrapulmonary, and 3071 (9.6%) were combined pulmonary and extrapulmonary. The percentages of tuberculosis cases that were exclusively extrapulmonary differed by lineage: East Asian, 13.0%; Euro-American, 13.8%; Indo-Oceanic, 22.6%; and East-African Indian, 34.3%. Compared with East Asian lineage, the odds of exclusively extrapulmonary tuberculosis relative to exclusively pulmonary tuberculosis were greater for Euro-American (adjusted OR, 1.3; 95% confidence interval [CI], 1.1-1.4), Indo-Oceanic (adjusted OR, 1.7; 95% CI, 1.5-1.9), and East-African Indian (adjusted OR, 1.6; 95% CI, 1.4-1.9) lineages. CONCLUSIONS: Phylogenetic lineage of M. tuberculosis is associated with the site of tuberculosis disease.
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“Regarding the accuracy of these techniques in the diagnosis of TL, a systematic review was published in 2007 by Daley et al,6 showing very heterogeneous results, with a sensitivity ranging from 2% to 100% depending on the studies. Sensitivity was higher in those studies when the PCR was performed with a commercial kit instead of an in-house PCR, and in those using FNA instead of biopsy.6”
From Epidemiology and Diagnosis of Tuberculous Lymphadenitis in a Tuberculosis Low-Burden Country (2015) · cites this paper as [6]
In the citing paper
“Scarce information about the role of these techniques in the diagnosis of TL has been published, and results are very different depending on the study.6,7”
From Epidemiology and Diagnosis of Tuberculous Lymphadenitis in a Tuberculosis Low-Burden Country (2015) · cites this paper as [6]
Citations
Cites
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Cited by
Consequences of genomic diversity in Mycobacterium tuberculosis
Coscolla, M., & Gagneux, S. (2014) · Seminars in Immunology · doi:10.1016/j.smim.2014.09.012 · Cited by 451
Guerra-Assunção, J., Crampin, A., Houben, R., Mzembe, T., Mallard, K., Coll, F., Khan, P., Banda, L., Chiwaya, A., Pereira, R., et al. (2015) · eLife · doi:10.7554/elife.05166 · Cited by 257
Mycobacterium tuberculosis Dissemination Plays a Critical Role in Pathogenesis
Moule, M. G., & Cirillo, J. D. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00065 · Cited by 246
Chronic Q fever: Expert opinion versus literature analysis and consensus
Raoult, D. (2012) · Journal of Infection · doi:10.1016/j.jinf.2012.04.006 · Cited by 163
Qian, X., Nguyen, D. T., Lyu, J., Albers, A. E., Bi, X., & Graviss, E. A. (2018) · Emerging Microbes & Infections · doi:10.1038/s41426-018-0106-1 · Cited by 162
Metadata
- Authors
- Click, E. S., Moonan, P. K., Winston, C. A., Cowan, L. S., & Oeltmann, J. E.
- Affiliations
- Centers for Disease Control and Prevention (US)
- Venue
- Clinical Infectious Diseases
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-12-23
- Volume
- 54
- Issue
- 2
- Pages
- 211-219
- ISSN
- 1058-4838 (ISSN-L)
- 1537-6591
- OpenAlex
- W2070904680
- Cited by
- 137
- References
- 29
- Citations by year
- 2026: 4 · 2025: 12 · 2024: 11 · 2023: 3 · 2022: 12 · 2021: 8 · 2020: 3 · 2019: 11 · 2018: 5 · 2017: 9 · 2016: 10 · 2015: 16 · 2014: 7 · 2013: 18 · 2012: 7
- FWCI
- 7.10
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Clinical Infectious Diseases (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
- Health Sciences › Medicine › Infectious Diseases › Infectious Diseases and Tuberculosis
- Health Sciences › Medicine › Infectious Diseases › Diagnosis and treatment of tuberculosis
- Keywords
- Mycobacterium tuberculosis, phylogenetic lineages, spoligotyping, extrapulmonary tuberculosis, pulmonary tuberculosis, East Asian lineage, Euro-American lineage, East African Indian lineage, tuberculosis surveillance
- MeSH terms
- Adolescent, Adult, Aged, Child, Child, Preschool, Cross-Sectional Studies, Female, Humans, Infant, Male, Middle Aged, Mycobacterium tuberculosis, Tuberculosis, United States, Odds Ratio, Racial Groups
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- Click, E. S., Moonan, P. K., Winston, C. A., Cowan, L. S., & Oeltmann, J. E. (2012). Relationship Between Mycobacterium tuberculosis Phylogenetic Lineage and Clinical Site of Tuberculosis. Clinical Infectious Diseases. https://doi.org/10.1093/cid/cir788
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
