Cited by 4Fungal and yeast genetics researchAntifungal resistance and susceptibilityYeasts and Rust Fungi Studies

The Epithelial adhesin 1 tandem repeat region mediates protein display through multiple mechanisms

Open access
Raposo, Colin J, McElroy, Kyle A, Fuchs, Stephen M·2020·FEMS Yeast Research

Published version of a preprint

Abstract

The pathogenic yeast Candida glabrata is reliant on a suite of cell surface adhesins that play a variety of roles necessary for transmission, establishment and proliferation during infection. One particular adhesin, Epithelial Adhesin 1 [Epa1p], is responsible for binding to host tissue, a process which is essential for fungal propagation. Epa1p structure consists of three domains: an N-terminal intercellular binding domain responsible for epithelial cell binding, a C-terminal GPI anchor for cell wall linkage and a serine/threonine-rich linker domain connecting these terminal domains. The linker domain contains a 40-amino acid tandem repeat region, which we have found to be variable in repeat copy number between isolates from clinical sources. We hypothesized that natural variation in Epa1p repeat copy may modulate protein function. To test this, we recombinantly expressed Epa1p with various repeat copy numbers in S. cerevisiae to determine how differences in repeat copy number affect Epa1p expression, surface display and binding to human epithelial cells. Our data suggest that repeat copy number variation has pleiotropic effects, influencing gene expression, protein surface display and shedding from the cell surface of the Epa1p adhesin. This study serves to demonstrate repeat copy number variation can modulate protein function through a number of mechanisms in order to contribute to pathogenicity of C. glabrata.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/femsyr/foaa018

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Previous studies show that variations in tandem repeat copy numbers within fungal adhesin proteins can affect their surface hydrophobicity, cell surface display, and protein shedding, ultimately influencing their functions.

    “This agrees with previous studies showing that variations in tandem repeat copy numbers within fungal adhesin proteins can affect their surface hydrophobicity, cell surface display, and protein shedding, ultimately influencing their functions52,53.”

    From Adhesin Als4112 promotes Candida auris skin colonization through interactions with keratinocytes and extracellular matrix proteins (2025) · cites this paper as [52]

    The Abstract reports that Epa1p tandem-repeat copy number affects surface display, shedding, and protein function; the Results section on shedding reports less shedding as copy number increases. Our copy does not link repeat copy number to cell-surface hydrophobicity. Its Introduction mentions a hydrophobic signal peptide, which is a different property. (LLM, conf=0.88)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 30

  1. Ahmad KM, Kokosar J, Guo X et al. Genome structure and dynamics of the yeast pathogen Candida glabrata. FEMS Yeast Res. 2014; 14: 529– 35. 24528571 PMC4320752
  2. Alexander BD, Johnson MD, Pfeiffer CD et al. Increasing echinocandin resistance in Candida glabrata: clinical failure correlates with presence of FKS mutations and elevated minimum inhibitory concentrations. Clin Infect Dis. 2013; 56: 1724– 32. 23487382 PMC3658363
  3. Babokhov M, Mosaheb MM, Baker RW et al. Repeat-specific functions for the C-terminal domain of RNA polymerase II in budding yeast. G3. 2018a; 8: 1593– 601. 29523636 PMC5940151
  4. Babokhov M, Reinfeld BI, Hackbarth K et al. Tandem repeats drive variation of intrinsically disordered regions in budding yeast. bioRxiv. 2018b; 339663.
  5. Biscotti MA, Canapa A, Forconi M et al. Transcription of tandemly repetitive DNA: functional roles. Chromosome Res. 2015; 23: 463– 77. 26403245
  6. Cormack BP, Falkow S. Efficient homologous and illegitimate recombination in the opportunistic yeast pathogen Candida glabrata. Genetics. 1999; 151: 979– 87. 10049916 PMC1460538
  7. Cormack BP, Ghori N, Falkow S. An adhesin of the yeast pathogen Candida glabrata mediating adherence to human epithelial cells. Science. 1999; 285: 578– 82. 10417386
  8. de Groot PW, Kraneveld EA, Yin QY et al. The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins. Eukaryot Cell. 2008; 7: 1951– 64. 18806209 PMC2583536
  9. Diderrich R, Kock M, Maestre-Reyna M et al. Structural hot spots determine functional diversity of the Candida glabrata epithelial adhesin family. J Biol Chem. 2015; 290: 19597– 613. PMC4528126 26105055
  10. Feng BJ, Goldgar DE, Corbex M. Trend-TDT - a transmission/disequilibrium based association test on functional mini/microsatellites. BMC Genet. 2007; 8: 75. 17976242 PMC2180177
  11. Fidalgo M, Barrales RR, Ibeas JI et al. Adaptive evolution by mutations in the FLO11 gene. Proc Natl Acad Sci USA. 2006; 103: 11228– 33. 16844788 PMC1544070
  12. Fidel PL Jr., Vazquez JA, Sobel JD. Candida glabrata: review of epidemiology, pathogenesis, and clinical disease with comparison to C. albicans. Clin Microbiol Rev. 1999; 12: 80– 96. 9880475 PMC88907
  13. Frieman MB, McCaffery JM, Cormack BP. Modular domain structure in the Candida glabrata adhesin Epa1p, a beta1,6 glucan-cross-linked cell wall protein. Mol Microbiol. 2002; 46: 479– 92. 12406223
  14. Gemayel R, Vinces MD, Legendre M et al. Variable tandem repeats accelerate evolution of coding and regulatory sequences. Annu Rev Genet. 2010; 44: 445– 77. 20809801
  15. Halliwell SC, Smith MC, Muston P et al. Heterogeneous expression of the virulence-related adhesin Epa1 between individual cells and strains of the pathogen Candida glabrata. Eukaryot Cell. 2012; 11: 141– 50. 22140233 PMC3272907
  16. Hoffman CS, Winston F. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene. 1987; 57: 267– 72. 3319781
  17. Jentoft N. Why are proteins O-glycosylated? Trends Biochem Sci. 1990; 15: 291– 4. 2204153
  18. Karunanithi S, Vadaie N, Chavel CA et al. Shedding of the mucin-like flocculin Flo11p reveals a new aspect of fungal adhesion regulation. Current biology: CB. 2010; 20: 1389– 95. 20619652 PMC2918736
  19. Klis FM, Brul S, De Groot PW. Covalently linked wall proteins in ascomycetous fungi. Yeast. 2010; 27: 489– 93. 20043286
  20. Lin SJ, Schranz J, Teutsch SM. Aspergillosis case-fatality rate: systematic review of the literature. Clin Infect Dis. 2001; 32: 358– 66. 11170942
  21. Lopez-Fuentes E, Gutierrez-Escobedo G, Timmermans B et al. Candida glabrata's genome plasticity confers a unique pattern of expressed cell wall proteins. J Fungi (Basel). 2018; 4: 67. PMC6023349 29874814
  22. Madireddy A, Gerhardt J. Replication through repetitive DNA elements and their role in human diseases. Adv Exp Med Biol. 2017; 1042: 549– 81. 29357073
  23. Maestre-Reyna M, Diderrich R, Veelders MS et al. Structural basis for promiscuity and specificity during Candida glabrata invasion of host epithelia. Proc Natl Acad Sci USA. 2012; 109: 16864– 9. 23035251 PMC3479469
  24. Meem MH, Cullen PJ. The impact of protein glycosylation on Flo11-dependent adherence in Saccharomyces cerevisiae. FEMS Yeast Res. 2012; 12: 809– 18. 22816435 PMC3472133
  25. Pfaller MA, Diekema DJ. Epidemiology of invasive candidiasis: a persistent public health problem. Clin Microbiol Rev. 2007; 20: 133– 63. 17223626 PMC1797637
  26. Richard GF, Dujon B. Molecular evolution of minisatellites in hemiascomycetous yeasts. Mol Biol Evol. 2006; 23: 189– 202. 16177231
  27. Schekman R. The secretory pathway in yeast. Trends Biochem Sci. 1982; 7: 243– 6.
  28. Thierry A, Dujon B, Richard GF. Megasatellites: a new class of large tandem repeats discovered in the pathogenic yeast Candida glabrata. Cell Mol Life Sci. 2010; 67: 671– 6. 19946728 PMC11115930
  29. Timmermans B, De Las Penas A, Castano I et al. Adhesins in Candida glabrata. J Fungi (Basel). 2018; 4: 60. PMC6023314 29783771
  30. Verstrepen KJ, Jansen A, Lewitter F et al. Intragenic tandem repeats generate functional variability. Nat Genet. 2005; 37: 986– 90. 16086015 PMC1462868

Cited by

Sorted by citations

Authors
Raposo, C. J., McElroy, K. A., & Fuchs, S. M.
Affiliations
Tufts University (US)
Corresponding author
Fuchs, Stephen M
Venue
FEMS Yeast Research
Published
2020-04-17
Volume
20
Issue
3
ISSN
  • 1567-1356 (ISSN-L)
  • 1567-1364
OpenAlex
W3017366181
Cited by
4
References
3
Citations by year
2025: 2 · 2023: 1 · 2021: 1
FWCI
0.16
Type
journal article
Language
en
Open access
Locations
  • FEMS Yeast Research (publishedVersion, cc-by-nc)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
Funders
  • Army Research Office (W911NF-16–1-0175, W911NF-19-0299)
  • American Society for Biochemistry and Molecular Biology
  • Tufts University Summer Scholars
  • Justin and Ashleigh Nelson
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
  • Health Sciences › Medicine › Infectious Diseases › Antifungal resistance and susceptibility
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Yeasts and Rust Fungi Studies
Keywords
Candida glabrata, cell surface adhesins, glycosylphosphatidylinositol anchor, gene expression regulation, fungal pathogenicity, clinical isolates
MeSH terms
Candidiasis, Cell Adhesion, Epithelial Cells, Fungal Proteins, HeLa Cells, Humans, Protein Binding, Saccharomyces cerevisiae, Gene Expression, Tandem Repeat Sequences, Candida glabrata, DNA Copy Number Variations

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review