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False Discovery Rate in Linkage and Association Genome Screens for Complex Disorders
Abstract
We explore the implications of the false discovery rate (FDR) controlling procedure in disease gene mapping. With the aid of simulations, we show how, under models commonly used, the simple step-down procedure introduced by Benjamini and Hochberg controls the FDR for the dependent tests on which linkage and association genome screens are based. This adaptive multiple comparison procedure may offer an important tool for mapping susceptibility genes for complex diseases.
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Citations
Cites
The control of the false discovery rate in multiple testing under dependency
Benjamini, Y., & Yekutieli, D. (2001) · The Annals of Statistics · doi:10.1214/aos/1013699998 · Cited by 10,490
Cited by
Genomewide Association Studies: History, Rationale, and Prospects for Psychiatric Disorders
Psychiatric GWAS Consortium Coordinating Committee (2009) · American Journal of Psychiatry · doi:10.1176/appi.ajp.2008.08091354 · Cited by 450
Genomewide association for schizophrenia in the CATIE study: results of stage 1
Sullivan, P. F., Lin, D., Tzeng, J.-Y., van den Oord, E., Perkins, D., Stroup, T. S., Wagner, M., Lee, S., Wright, F. A., Zou, F., et al. (2008) · Molecular Psychiatry · doi:10.1038/mp.2008.25 · Cited by 355
Genetic predictors of response to antidepressants in the GENDEP project
Uher, R., Huezo-Diaz, P., Perroud, N., Smith, R., Rietschel, M., Mors, O., Hauser, J., Maier, W., Kozel, D., Henigsberg, N., et al. (2009) · The Pharmacogenomics Journal · doi:10.1038/tpj.2009.12 · Cited by 226
Demographically-based evaluation of genomic regions under selection in domestic dogs
Freedman, A. H., Schweizer, R. M., Ortega-Del Vecchyo, D., Han, E., Davis, B. W., Gronau, I., Silva, P. M., Galaverni, M., Fan, Z., Marx, P., et al. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1005851 · Cited by 104
Metadata
- Authors
- Sabatti, C., Service, S., & Freimer, N.
- Venue
- Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-06-01
- Volume
- 164
- Issue
- 2
- Pages
- 829-833
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W2100212335
- Cited by
- 171
- References
- 1
- FWCI
- 8.20
- Type
- journal article
- Language
- en
- Open access
- closed
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- Sabatti, C., Service, S., & Freimer, N. (2003). False Discovery Rate in Linkage and Association Genome Screens for Complex Disorders. Genetics. https://doi.org/10.1093/genetics/164.2.829
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
