The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.
DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
Open accessAbstract
DAMBE is a comprehensive software package for genomic and phylogenetic data analysis on Windows, Linux, and Macintosh computers. New functions include imputing missing distances and phylogeny simultaneously (paving the way to build large phage and transposon trees), new bootstrapping/jackknifing methods for PhyPA (phylogenetics from pairwise alignments), and an improved function for fast and accurate estimation of the shape parameter of the gamma distribution for fitting rate heterogeneity over sites. Previous method corrects multiple hits for each site independently. DAMBE's new method uses all sites simultaneously for correction. DAMBE, featuring a user-friendly graphic interface, is freely available from http://dambe.bio.uottawa.ca (last accessed, April 17, 2018).
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Cites
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Kumar, S., Stecher, G., & Tamura, K. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw054 · Cited by 44,059
Prospects for inferring very large phylogenies by using the neighbor-joining method
Tamura, K., Nei, M., & Kumar, S. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0404206101 · Cited by 5,574
PHYLIP (Phylogeny Inference Package)
Cummings, M. P. (2004) · Dictionary of Bioinformatics and Computational Biology · doi:10.1002/0471650129.dob0534 · Cited by 1,967
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
Xia, X. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst064 · Cited by 1,154
Self-citationDAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution
Xia, X. (2017) · Journal of Heredity · doi:10.1093/jhered/esx033 · Cited by 401
Self-citationSmith, H. (1970) · Technometrics · doi:10.1080/00401706.1970.10488716 · Cited by 375
A simple method for estimating the parameter of substitution rate variation among sites
Gu, X., & Zhang, J. (1997) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025720 · Cited by 143
The rate heterogeneity of nonsynonymous substitutions in mammalian mitochondrial genes
Xia, X. (1998) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025930 · Cited by 57
Self-citationXia, X. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.04.017 · Cited by 34
Self-citationXia, X. (2016) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2016.07.001 · Cited by 28
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Cited by
Domains and Functions of Spike Protein in SARS-Cov-2 in the Context of Vaccine Design
Xia, X. (2021) · Viruses · doi:10.3390/v13010109 · Cited by 319
Self-citationDetailed Dissection and Critical Evaluation of the Pfizer/BioNTech and Moderna mRNA Vaccines
Xia, X. (2021) · Vaccines · doi:10.3390/vaccines9070734 · Cited by 201
Self-citationExtreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense
Xia, X. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa094 · Cited by 160
Self-citationde Albuquerque, N. R. M., Haag, K. L., Fields, P. D., Cabalzar, A., Ben‐Ami, F., Pombert, J., & Ebert, D. (2022) · Journal of Eukaryotic Microbiology · doi:10.1111/jeu.12902 · Cited by 18
Farookhi, H., & Xia, X. (2024) · Microorganisms · doi:10.3390/microorganisms12040768 · Cited by 7
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Metadata
- Authors
- Xia, X.
- Venue
- Molecular Biology and Evolution
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-04-14
- Volume
- 35
- Issue
- 6
- Pages
- 1550-1552
- ISSN
- 0737-4038 (ISSN-L)
- 1537-1719
- OpenAlex
- W2797734999
- Cited by
- 786
- References
- 11
- FWCI
- 21.89
- Type
- journal article
- Language
- en
- Open access
- hybrid
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
