Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Cited by (1,546)

Items 301–400 of 1,546

1. Mobility of Plasmids
   Christopher S. Smillie, Maria Pilar Garcillán-Barcia, María Victoria Francia, Eduardo P. C. Rocha, Fernando de la Cruz · 2010 · Microbiology and Molecular Biology Reviews
2. Classification and phylogeny of hydrogenases
   Paulette M. Vignais, Bernard Billoud, Jacques Meyer · 2001 · FEMS Microbiology Reviews
3. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
   Mark Chaisson, Glenn Tesler · 2012 · BMC Bioinformatics
4. Identification of the acyltransferase that octanoylates ghrelin, an appetite-stimulating peptide hormone.
   Jing Yang, Michael S. Brown, G. Liang, N. Grishin, J. Goldstein · 2008 · Cell
5. Feature-based prediction of non-classical and leaderless protein secretion
   Jannick Dyrløv Bendtsen, Lars Juhl Jensen, Nikolaj Blom, Gunnar von HEIJNE, Søren Brunak · 2004 · Protein Engineering Design and Selection
6. Evolutionary analysis of <i>Arabidopsis</i> , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
   Martin, William, Rujan, Tamas, Richly, Erik, Hansen, Andrea, Cornelsen, Sabine, Lins, Thomas, Leister, Dario, Stoebe, Bettina, Hasegawa, Masami, Penny, David · 2002 · Proceedings of the National Academy of Sciences
7. KEGG Mapper for inferring cellular functions from protein sequences
   Minoru I. Kanehisa, Yoko Sato · 2019 · Protein Science
8. Beclin 1 Forms Two Distinct Phosphatidylinositol 3-Kinase Complexes with Mammalian Atg14 and UVRAG
   Itakura, Eisuke, Kishi, Chieko, Inoue, Kinji, Mizushima, Noboru · 2008 · Molecular Biology of the Cell
9. A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna
   Leslie B. Vosshall, Hubert Amrein, Pavel S Morozov, Andrey Rzhetsky, Richard Axel · 1999 · Cell
10. Polyhydroxyalkanoates: an overview
    C.S.K Reddy, Rohit Ghai, Rashmi, Vipin Chandra Kalia · 2002 · Bioresource Technology
11. PipMaker—A Web Server for Aligning Two Genomic DNA Sequences
    Scott Schwartz, Zheng Zhang, Kelly A. Frazer, Arian F. A. Smit, Cathy Riemer, John B. Bouck, Richard A. Gibbs, Ross C. Hardison, Webb Miller · 2000 · Genome Research
12. The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information
    Chen, T., Yu, W.-H., Izard, J., Baranova, O. V., Lakshmanan, A., Dewhirst, F. E. · 2010 · Database
13. UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi
    Urmas Kõljalg, Karl‐Henrik Larsson, Kessy Abarenkov, R. Henrik Nilsson, Ian James Alexander, Ursula Eberhardt, Susanne Erland, Klaus Høiland, Rasmus Kjøller, Ellen Larsson et al. · 2005 · New Phytologist
14. IgBLAST: an immunoglobulin variable domain sequence analysis tool
    Jian Ye, Ning Ma, Thomas Madden, James M. Ostell · 2013 · Nucleic Acids Research
15. Multiple early factors anticipate post-acute COVID-19 sequelae
    Su, Yapeng, Yuan, Dan, Chen, Daniel G., Ng, Rachel H., Wang, Kai, Choi, Jongchan, Li, Sarah, Hong, Sunga, Zhang, Rongyu, Xie, Jingyi et al. · 2022 · Cell
16. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
    Angélique D’Hont, France Denœud, Jean‐Marc Aury, Franc‐Christophe Baurens, Françoise Carreel, Olivier Garsmeur, Benjamin Noël, Stéphanie Bocs, Gaëtan Droc, Mathieu Rouard et al. · 2012 · Nature
17. Classification and evolution of P-loop GTPases and related ATPases
    Leipe, Detlef D, Wolf, Yuri I, Koonin, Eugene V, Aravind, L · 2002 · Journal of Molecular Biology
18. HH-suite3 for fast remote homology detection and deep protein annotation
    Steinegger, Martin, Meier, Markus, Mirdita, Milot, Vöhringer, Harald, Haunsberger, Stephan J., Söding, Johannes · 2019 · BMC Bioinformatics
19. Comparative Protein Structure Modeling Using MODELLER
    Benjamin Webb, Andrej Šali · 2014 · Current Protocols in Bioinformatics
20. Towards a Genome-Based Taxonomy for Prokaryotes
    Konstantinos T. Konstantinidis, James M. Tiedje · 2005 · Journal of Bacteriology
21. Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System
    Nicolas Rapin, Ole Lund, Massimo Bernaschi, Filippo Castiglione · 2010 · PLoS ONE
22. The Arabidopsis Abscisic Acid Response Gene ABI5 Encodes a Basic Leucine Zipper Transcription Factor
    Ruth R. Finkelstein, Tim J. Lynch · 2000 · The Plant Cell
23. Comparative Analysis of the Receptor-Like Kinase Family in Arabidopsis and Rice[W]
    Shin‐Han Shiu, Wojciech Maciej Karlowski, Runsun Pan, Yun-Huei Tzeng, Klaus Mayer, Wen‐Hsiung Li · 2004 · The Plant Cell
24. Horizontal gene transfer in prokaryotes: Quantification and classification
    Koonin, Eugene V., Makarova, Kira S., Aravind, L. · 2001 · Annual Review of Microbiology
25. The medaka draft genome and insights into vertebrate genome evolution
    Masahiro Kasahara, Kiyoshi Naruse, Shin Sasaki, Yoichiro Nakatani, Wei Qü, Budrul Ahsan, Tomoyuki Yamada, Yukinobu Nagayasu, Koichiro Doi, Yasuhiro Kasai et al. · 2007 · Nature
26. Pendred syndrome is caused by mutations in a putative sulphate transporter gene (PDS)
    Lorraine A. Everett, Benjamin Gläser, John S. Beck, Jacquelyn R. Idol, Andreas E. Buchs, Maayan Heyman, Faiad Adawi, Elizur Hazani, Elias Nassir, Andreas D. Baxevanis et al. · 1997 · Nature Genetics
27. Database resources of the National Center for Biotechnology
    David Lee Wheeler · 2003 · Nucleic Acids Research
28. A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
    Hildur V. Colot, Gyungsoon Park, G. Turner, Carol S. Ringelberg, Christopher M. Crew, Liubov Litvinkova, Richard L. Weiss, Katherine A. Borkovich, Jay Dunlap · 2006 · Proceedings of the National Academy of Sciences
29. Ab initio Gene Finding in Drosophila Genomic DNA
    Asaf A. Salamov, Victor V. Solovyev · 2000 · Genome Research
30. Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    Mark J. Gibbs, John S. Armstrong, Adrian J. Gibbs · 2000 · Bioinformatics
31. Counting the Zinc-Proteins Encoded in the Human Genome
    Andreini, Claudia, Banci, Lucia, Bertini, Ivano, Rosato, Antonio · 2006 · Journal of Proteome Research
32. The EMBL Nucleotide Sequence Database
    W. Baker · 2000 · Nucleic Acids Research
33. Protein function prediction via graph kernels
    Karsten Michael Borgwardt, Cheng Soon Ong, Stefan Schönauer, S. V. N. Vishwanathan, Alexander Johannes Smola, H.-P. Kriegel · 2005 · Bioinformatics
34. ProbCons: Probabilistic consistency-based multiple sequence alignment
    Chuong B. Do, Mahathi S.P. Mahabhashyam, Michael Brudno, Serafim Batzoglou · 2005 · Genome Research
35. An iron-regulated ferric reductase associated with the absorption of dietary iron
    McKie, Andrew T., Barrow, Dalna, Latunde-Dada, Gladys O., Rolfs, Andreas, Sager, Giamal, Mudaly, Elida, Mudaly, Melitta, Richardson, Christopher, Barlow, David, Bomford, Adrian et al. · 2001 · Science
36. Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
    A. P. Jason de Koning, Wanjun Gu, Todd A. Castoe, Mark A. Batzer, David D. Pollock · 2011 · PLoS Genetics
37. Prediction of lipoprotein signal peptides in Gram‐negative bacteria
    Agnieszka Sierakowska Juncker, Hanni Willenbrock, Gunnar von HEIJNE, Søren Brunak, Henrik Nielsen, Anders Krogh · 2003 · Protein Science
38. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences.
    Christian Iseli, C. Victor Jongeneel, Philipp Bücher · 1999 · PubMed
39. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
    Eugene V. Koonin, Natalie D. Fedorova, John D Jackson, Aviva R. Jacobs, Dmitri M. Krylov, Kira S. Makarova, Raja Mazumder, Sergei Mekhedov, Anastasia N. Nikolskaya, B Sridhar Rao et al. · 2004 · Genome biology
40. 16S Ribosomal DNA Sequence Analysis of a Large Collection of Environmental and Clinical Unidentifiable Bacterial Isolates
    Michel Drancourt, Claude Bollet C, Antoine Carlioz, Rolland Martelin, Jean-Pierre Gayral, Didier Raoult · 2000 · Journal of Clinical Microbiology
41. Using PyMOL as a platform for computational drug design
    Shuguang Yuan, H. C. Stephen Chan, Zhenquan Hu · 2017 · Wiley Interdisciplinary Reviews Computational Molecular Science
42. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    Ray Ming, Shaobin Hou, Yun Feng, Qingyi Yu, Alexandre Dionne‐Laporte, Jimmy H. W. Saw, Pavel Senin, Wei Wang, Benjamin V. Ly, Kanako L. T. Lewis et al. · 2008 · Nature
43. Bottom-up effects of plant diversity on multitrophic interactions in a biodiversity experiment
    Christoph Scherber, Nico Eisenhauer, Wolfgang W. Weisser, Bernhard Schmid, Winfried Voigt, Markus Fischer, Ernst‐Detlef Schulze, Christiane Roscher, Alexandra Weigelt, Eric Allan et al. · 2010 · Nature
44. Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58
    Hervé Tettelin, Nigel James St George Saunders, John F. Heidelberg, Alex C. Jeffries, Karen E. Nelson, Jonathan A. Eisen, Karen A. Ketchum, Derek W. Hood, John F. Peden, Robert J. Dodson et al. · 2000 · Science
45. High-Resolution Comparative Modeling with RosettaCM
    Yifan Song, Frank DiMaio, Ray Yu‐Ruei Wang, David E. Kim, Chris Miles, TJ Brunette, James Thompson, David A. Baker · 2013 · Structure
46. Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans
    Troels Zakarias Kristiansen, J. Daniel Navarro, Ramars Amanchy, Troels Zakarias Kristiansen, Chandra Kiran Jonnalagadda, Vineeth Surendranath, Vidya Niranjan, Babylakshmi Muthusamy, T.K.B. Gandhi, Mads Gronborg et al. · 2003 · Genome Research
47. VirSorter: mining viral signal from microbial genomic data
    Simon Roux, François Enault, Bonnie L. Hurwitz, Matthew B. Sullivan · 2015 · PeerJ
48. Protein interaction maps for complete genomes based on gene fusion events
    Anton James Enright, Ioannis Iliopoulos, Nikos C. Kyrpides, Christos A. Ouzounis · 1999 · Nature
49. ModBase, a database of annotated comparative protein structure models, and associated resources
    Ursula Pieper, Benjamin Webb, David T. Barkan, Dina Schneidman‐Duhovny, Avner Schlessinger, Hannes Braberg, Z. Yang, Elvin Meng, Eric F. Pettersen, C.C. Huang et al. · 2010 · Nucleic Acids Research
50. Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]
    Guillaume Blanc, Kenneth H. Wolfe · 2004 · The Plant Cell
51. CDD: specific functional annotation with the Conserved Domain Database
    Aron Marchler‐Bauer, J. B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, C. DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, N. R. Gonzales, M. Gwadz et al. · 2008 · Nucleic Acids Research
52. Epigenetic inactivation of a RAS association domain family protein from the lung tumour suppressor locus 3p21.3
    Reinhard Dammann, Chun Li, Jung‐Hoon Yoon, Philip L. Chin, Steven Bates, Gerd P. Pfeifer · 2000 · Nature Genetics
53. Environmental DNA
    Pierre Taberlet, Aurélie Bonin, Lucie Zinger, Éric Coissac · 2018
54. Protein database searches using compositionally adjusted substitution matrices
    Stephen F. Altschul, John C. Wootton, Edward Michael Gertz, Richa Agarwala, Aleksandr O. Morgulis, Alejandro A. Schäffer, Yi‐Kuo Yu · 2005 · FEBS Journal
55. PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
    Alexis Lamiable, P. Thévenet, Julien Rey, Marek Vavruša, Philippe Derreumaux, Pierre Tufféry · 2016 · Nucleic Acids Research
56. The Basic Helix-Loop-Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity
    Marc A. Heim · 2003 · Molecular Biology and Evolution
57. The genome of the blood fluke Schistosoma mansoni
    Matthew Berriman, Brian J. Haas, Philip T. LoVerde, Robert Alan Wilson, Gary P. Dillon, Gustavo G. Cerqueira, Susan T. Mashiyama, Bissan Al‐Lazikani, Luiza F Andrade, Peter D. Ashton et al. · 2009 · Nature
58. The physiology and habitat of the last universal common ancestor
    Weiss, Madeline C., Sousa, Filipa L., Mrnjavac, Natalia, Neukirchen, Sinje, Roettger, Mayo, Nelson-Sathi, Shijulal, Martin, William F. · 2016 · Nature Microbiology
59. A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
    Riccardo Velasco, Andrey Zharkikh, Michela Troggio, Dustin Cartwright, Alessandro Cestaro, Dmitry Pruss, Massimo Pindo, Lisa M. Fitzgerald, Silvia Vezzulli, Julia Reid et al. · 2007 · PLoS ONE
60. The 1.2-Megabase Genome Sequence of Mimivirus
    Didier Raoult, Stéphane Audic, Catherine Robert, Chantal Abergel, Patricia Renesto, Hiroyuki Ogata, Bernard La Scola, Marie Suzan, Jean‐Michel Claverie · 2004 · Science
61. Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
    Anders F. Andersson, Mathilda Lindberg, Hedvig E. Jakobsson, Fredrik Bäckhed, Pål Nyrén, Lars G. Engstrand · 2008 · PLoS ONE
62. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022
    CNCB-NGDC Members and Partners, Yongbiao Xue, Yīmíng Bào, Zhang Zhang, Wenming Zhao, Jingfa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao et al. · 2021 · Nucleic Acids Research
63. SCRATCH: a protein structure and structural feature prediction server
    Jianlin Jack Cheng, Arlo Z. Randall, Michael J. Sweredoski, Pierre Baldi · 2005 · Nucleic Acids Research
64. The Origins of Genomic Duplications in Arabidopsis
    Todd Vision, Daniel G. Brown, Steven D. Tanksley · 2000 · Science
65. Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
    Joëlle Amselem, Christina A. Cuomo, Jan A. L. van Kan, Muriel Viaud, Ernesto P. Benito, Arnaud Couloux, Pedro M. Coutinho, Ronald P. de Vries, Paul S. Dyer, Sabine Fillinger et al. · 2011 · PLoS Genetics
66. mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes
    Isabelle Behm‐Ansmant, Jan Rehwinkel, Tobias Doerks, Alexander Stark, Peer Bork, Elisa Izaurralde · 2006 · Genes & Development
67. Comparative genomics reveals insights into avian genome evolution and adaptation
    Zhang, Guojie, Li, Cai, Li, Qiye, Li, Bo, Larkin, Denis M., Lee, Chul, Storz, Jay F., Antunes, Agostinho, Greenwold, Matthew J., Meredith, Robert W. et al. · 2014 · Science
68. A large-scale evaluation of computational protein function prediction
    Radivojac, Predrag, Clark, Wyatt T, Oron, Tal Ronnen, Schnoes, Alexandra M, Wittkop, Tobias, Sokolov, Artem, Graim, Kiley, Funk, Christopher, Verspoor, Karin, Ben-Hur, Asa et al. · 2013 · Nature Methods
69. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton
    Yan Hu, Jiedan Chen, Lei Fang, Zhiyuan Zhang, Wei Ma, Yongchao Niu, Longzhen Ju, Jieqiong Deng, Ting Zhao, Jinmin Lian et al. · 2019 · Nature Genetics
70. Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
    Jianyi Yang, Ambrish Roy, Yang Zhang · 2013 · Bioinformatics
71. GenBank
    D. A. Benson · 2004 · Nucleic Acids Research
72. Crystal structure of the PTEN tumor suppressor: implications for its phosphoinositide phosphatase activity and membrane association.
    Jie-Oh Lee, Hai-Juan Yang, M. Georgescu, A. Di Cristofano, T. Maehama, Y. Shi, J. Dixon, P. Pandolfi, N. Pavletich · 1999 · Cell
73. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods
    Heidi J. Sofia · 2001 · Nucleic Acids Research
74. Clustering of highly homologous sequences to reduce the size of large protein databases
    Wei-Zhong Li, L. Jaroszewski, A. Godzik · 2001 · Bioinform.
75. ProteinBERT: a universal deep-learning model of protein sequence and function
    Brandes, Nadav, Ofer, Dan, Peleg, Yam, Rappoport, Nadav, Linial, Michal · 2022 · Bioinformatics
76. Database resources of the National Center for Biotechnology Information
    Wheeler, D. L., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., Church, D. M., DiCuccio, M., Edgar, R., Federhen, S. et al. · 2007 · Nucleic Acids Research
77. The Human Plasma Proteome
    N. Leigh Anderson, Malu Polanski, Rembert Pieper, Tina Gatlin, Radhakrishna S. Tirumalai, Thomas P. Conrads, Timothy D. Veenstra, Joshua Adkins, Joel G. Pounds, Richard J. Fagan et al. · 2004 · Molecular & Cellular Proteomics
78. MODOMICS: a database of RNA modification pathways—2013 update
    Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elżbieta Purta, Małgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanisław Dunin-Horkawicz, Kristian M. Rother et al. · 2012 · Nucleic Acids Research
79. Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.
    Mobolaji Adeolu, Seema Alnajar, Sohail Naushad, Radhey S. Gupta · 2016 · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
80. The SWISS-MODEL Repository: new features and functionalities
    J. Kopp · 2005 · Nucleic Acids Research
81. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity.
    M. Buée, M. Reich, C. Murat, E. Morin, R. Nilsson, S. Uroz, F. Martin · 2009 · New Phytologist
82. A Systematic Analysis of Human Disease-Associated Gene Sequences In Drosophila melanogaster
    Lawrence T. Reiter, Lorraine Potocki, Sam Chien, Michael Gribskov, Ethan Bier · 2001 · Genome Research
83. Accurate determination of microbial diversity from 454 pyrosequencing data
    Christopher Quince, Anders Lanzén, Thomas Peter Curtis, Russell James Davenport, Neil Hall, Ian M. Head, L. F. Read, William T. Sloan · 2009 · Nature Methods
84. SMART 4.0: towards genomic data integration
    Ivica Letunić · 2003 · Nucleic Acids Research
85. Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R
    S. Wright Erik · 2016 · The R Journal
86. Genomic analysis of uncultured marine viral communities
    Mya Breitbart, Peter Salamon, Bjarne Andresen, Joseph M. Mahaffy, Anca Mara Segall, David A. Mead, Farooq Azam, Forest L. Rohwer · 2002 · Proceedings of the National Academy of Sciences
87. Thousands of chemical starting points for antimalarial lead identification
    Francisco‐Javier Gamo, Laura María Sanz, Jaume Vidal, Cristina de Cózar, Emilio Fernández Álvarez, José-Luis Lavandera, Dana E. Vanderwall, Darren V. S. Green, Vinod D. Kumar, Samiul Hasan et al. · 2010 · Nature
88. The Transporter Classification Database (TCDB): recent advances
    Milton H. Saier, Vamsee S. Reddy, Brian V. Tsu, Muhammad Saad Ahmed, Chun Li, Gabriel Moreno‐Hagelsieb · 2015 · Nucleic Acids Research
89. Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses[W]
    Wenqiong Chen, Nicholas James Provart, Jane Glazebrook, Fumiaki Katagiri, Hur‐Song Chang, Thomas Eulgem, Félix Mauch, Sheng Luan, Guangzhou Zou, Steve A. Whitham et al. · 2002 · The Plant Cell
90. Parkin functions as an E2-dependent ubiquitin– protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1
    Zhang, Yi, Gao, Jun, Chung, Kenny K. K., Huang, Hui, Dawson, Valina L., Dawson, Ted M. · 2000 · Proceedings of the National Academy of Sciences
91. Analysis of Transcription Factor HY5 Genomic Binding Sites Revealed Its Hierarchical Role in Light Regulation of Development
    Jungeun Lee, Kun He, Viktor Štolc, Horim Lee, Pablo M. Figueroa, Ying Gao, Waraporn Tongprasit, Hongyu Zhao, Ilha Lee, Xing Wang Deng · 2007 · The Plant Cell
92. The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
    Ines Fonfara, Hagen Richter, Majda Bratovič, Anaïs Le Rhun, Emmanuelle Charpentier · 2016 · Nature
93. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation
    Duong Vu, Marizeth Groenewald, M. de Vries, Thies Gehrmann, J. Benjamin Stielow, Ursula Eberhardt, Abdullah M. S. Al‐Hatmi, J.Z. Groenewald, Gianluigi Cardinali, Jos A. M. P. Houbraken et al. · 2018 · Studies in Mycology
94. aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity
    Shigehiro Kuraku, Christian M. Zmasek, Osamu Nishimura, Kazutaka Katoh · 2013 · Nucleic Acids Research
95. Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development
    Woolfe, Adam, Goodson, Martin, Goode, Debbie K, Snell, Phil, McEwen, Gayle K, Vavouri, Tanya, Smith, Sarah F, North, Phil, Callaway, Heather, Kelly, Krys et al. · 2004 · PLoS Biology
96. Spatial separation of litter decomposition and mycorrhizal nitrogen uptake in a boreal forest
    Björn D. Lindahl, Katarina Ihrmark, Johanna B. Boberg, Susan Elizabeth Trumbore, Peter Högberg, Jan Stenlid, Roger D. Finlay · 2006 · New Phytologist
97. The Genetic Basis for Bacterial Mercury Methylation
    Jerry M. Parks, Alexander Johs, Mircea Podar, Romain Bridou, Richard A. Hurt, Steven Dale Smith, Stephen J. Tomanicek, Yun Qian, Steven D. Brown, Craig C. Brandt et al. · 2013 · Science
98. SSAHA: A Fast Search Method for Large DNA Databases
    Ning, Zemin, Cox, Anthony J., Mullikin, James C. · 2001 · Genome Research
99. Commensal Microbiota Promote Lung Cancer Development via γδ T Cells
    Jin, Chengcheng, Lagoudas, Georgia K., Zhao, Chen, Bullman, Susan, Bhutkar, Arjun, Hu, Bo, Ameh, Samuel, Sandel, Demi, Liang, Xu Sue, Mazzilli, Sarah et al. · 2019 · Cell
100. Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples
     Heath O’Brien, Jeri Lynn Parrent, Jason A. Jackson, Jean‐Marc Moncalvo, Rytas J. Vilgalys · 2005 · Applied and Environmental Microbiology