The Protein Data Bank: unifying the archive

Westbrook, J.·2002·Nucleic Acids Research
DOI 10.1093/nar/30.1.245

Cited by (311)

Items 201–300 of 311

  1. Virtual screening, optimization, and identification of a novel specific PTP-MEG2 Inhibitor with potential therapy for T2DM
    Meiyan Wang, Xiaobo Li, Lei Dong, Xiu‐Bo Chen, Weiren Xu, Run‐Ling Wang · 2016 · Oncotarget
  2. Characterization of Protein Structure and Function at Genome Scale with a Computational Prediction Pipeline
    Dong He Xu, Dongsup Kim, Phuongan Dam, Manesh B. Shah, Edward C. Uberbacher, Ying Xu · 2003 · Springer eBooks
  3. Towards Semantic Interoperability of Protein Data Sources
    Amandeep Singh Sidhu, Tharam Singh Dillon, Elizabeth J. Chang · 2006 · Lecture notes in computer science
  4. Disease Co-Morbidity and the Human Wnt Signaling Pathway: A Network-Wise Study
    Losiana Nayak, Harinandan Tunga, Rajat Kumar De · 2013 · OMICS A Journal of Integrative Biology
  5. Review of the Biocatalysis/Biodegradation Database (UM-BBD)
    Anthony P. Burgard, Costas D. Maranas · 2002 · Metabolic Engineering
  6. Databases and QSAR for cancer research.
    Adeel Malik, Hemajit Singh, Munazah Andrabi, Syed Akhtar Husain, Shandar Ahmad · 2007 · PubMed Central
  7. Structure and function correlations between the rat liver threonine deaminase and aminotransferases
    Maria Scarselli, Maria Giuseppina Padula, Andrea Bernini, Ottavia Spiga, Arianna Ciutti, Roberto Leoncini, Daniela Vannoni, ENRICO MARINELLO, Neri Niccolai · 2003 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
  8. The protein ontology project: Structured vocabularies for proteins
    Elizabeth J. Chang, Amandeep Singh Sidhu, Baldev S. Sidhu, Tharam Singh Dillon · 2005 · eSpace (Curtin University)
  9. Lib ME —automatic extraction of 3D ligand‐binding motifs for mechanistic analysis of protein–ligand recognition
    Wei He, Zhi Guo Liang, Maikun Teng, Liwen Niu · 2016 · FEBS Open Bio
  10. To Explore the Key Active Compounds and Therapeutic Mechanism of Guizhi Gancao Decoction in Coronary Heart Disease by Network Pharmacology and Molecular Docking
    Huajing Yuan, Yitao Xue · 2022 · Evidence-based Complementary and Alternative Medicine
  11. Exploring anticancer potential of nintedanib conjugated magnetic nanoparticles: In-vitro and in-silico studies
    Rakesh P. Dhavale, Rushikesh P. Dhavale, Manish Sudesh Bhatia, Sagar U. Jadhav, Maruti Jayram Dhanavade, Sagar S. Barale, Sachin Pathak, Vinayak G. Parale, Kailas Dashrath Sonawane · 2023 · Journal of Drug Delivery Science and Technology
  12. Techniques for Developing Reliable Machine Learning Classifiers Applied to Understanding and Predicting Protein:Protein Interaction Hot Spots
    Jiaxing Chen, Leslie A. Kuhn, Sebastian Raschka · 2023 · Methods in molecular biology
  13. Modeling and phylogenetic analysis of cytosolic ascorbate peroxidase (OsAPX1) from rice reveal signature motifs that may play a role in stress tolerance
    Saurabh Prakash Pandey, Yogesh Kumar Negi, Chinreddy Subramanyam Reddy, Krishnamurthy Sathelly, Sandeep Arora, Tanushri Kaul · 2014 · Bioinformation
  14. Machine Learning for Protein Structure and Function Prediction
    Robert Ezra Langlois, Hui Juan Lu · 2008 · Annual reports in computational chemistry
  15. Structural modelling and phylogenetic analyses of PgeIF4A2 (Eukaryotic translation initiation factor) from Pennisetum glaucum reveal signature motifs with a role in stress tolerance and development
    Aakrati Agarwal, Yashwanti Mudgil, Saurabh Prakash Pandey, Dhirendra Fartyal, Malireddy K. Reddy · 2016 · Bioinformation
  16. Computer-aided drug design of capuramycin analogues as anti-tuberculosis antibiotics by 3D-QSAR and molecular docking
    Yuanyuan Jin, Shuai Fan, Guangxin Lv, Haoyi Meng, Zhengyang Sun, Wei Jiang, Steven G. Van Lanen, Zhaoyong Yang · 2017 · Open Chemistry
  17. Toward Characterising the Cellular 3D-Proteome
    Arne Elofsson · 2021 · Frontiers in Bioinformatics
  18. Modeling and structural analysis of human Guanine nucleotide-binding protein-like 3, nucleostemin
    Farinaz Nazmi, Mohammad Amin Moosavi, Marveh Rahmati, Mohammad Ali Hossein Pour Feizi · 2015 · Bioinformation
  19. EST2Prot: Mapping EST sequences to proteins
    Paul Shafer, David Ming Lin, Golan Yona · 2006 · BMC Genomics
  20. Introducing Protein Data Bank, Molecular Modeling Database, and Cn3D
    Jennifer A. Lyon, Michele R. Tennant, Blaine Danielson · 2006 · Journal of Electronic Resources in Medical Libraries
  21. A computational pipeline for protein structure prediction and analysis at genome scale
    Manesh B. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Lı Wang, Inna Vokler · 2003 · IEEE International Conference on Bioinformatics and Bioengineering (BIBE)
  22. A multi-expert system for the automatic detection of protein domains from sequence information
    Niranjan Nagarajan, Golan Yona · 2003 · Research in Computational Molecular Biology
  23. An Insight of Protein Structure Predictions Using Homology Modeling
    Sankar Muthumanickam, P. Boomi, Rathinasamy Subashkumar, S. Palanisamy, Arumugam Sudha, Krishnan Anand, C. Balakumar, M. Saravanan, G. Poorani, Yao Wang et al. · 2021
  24. Comparative Protein Structure Modeling
    András Fiser, Andrej Šali · 2003 · CRC Press eBooks
  25. In-silico inquest reveal the efficacy of Usnea longissima ach. (A tropical Lichen) against ovarian cancer
    Soumyajit Das, Shivaleela Biradar, Rosni Jabin, Sutapa Datta, Farishta Yasmin, Babu R.L, Arnab Sen · 2025 · In Silico Pharmacology
  26. A New Plant Growth Regulator: An In Silico Evaluation
    Giovanny Hernández Montaño, Silvia Patricia Paredes-Carrera, José Jorge Chanona‐Pérez, Darío Iker Téllez‐Medina, Tomás Alejandro Fregoso-Aguilar, Jorge Alberto Mendoza-Pérez, Dulce Estefanía Nicolás Álvarez · 2025 · Applied Sciences
  27. Pivot Role of Bioinformatics in Drug Discovery Using Marine Natural Products as Resources
    Leena Grace Beslin, Sobira Shirin Nufaisa · 2023 · Trends in Medical Research
  28. Brownian dynamics simulations of the interactions between lactate dehydrogenase (LDH) and G- or F-Actin. Part I: Muscle and heart homo-isoforms
    Eric N. Njabon, Issofa Patouossa, Kristine L. Carlson, Stephen L. Lowe, Neville Y. Forlemu, Kathryn A. Thomasson · 2020 · Scientific African
  29. Exploration and verification of the therapeutic mechanism of shenfu injection in sepsis-induced myocardial injury
    Huajing Yuan, Guo-han Xiang, Yang Liu, Yan Li, Wenli Liu, Jiu-xiang Wei, Yitao Xue, Hao Hao · 2025 · PLoS ONE
  30. Information Resources and Database Development for Defense Against Biological Weapons
    Frank J. Lebeda, Murray Wolinsky, Elliot J. Lefkowitz · 2005 · Humana Press eBooks
  31. Deployment of Protein Ontology Framework
    Amandeep Singh Sidhu, Tharam Singh Dillon, Elizabeth J. Chang · 2007 · International Journal on Applied Bio-Engineering
  32. Application of maximin correlation analysis to classifying protein environments for function prediction
    Taehoon Lee, Hyeyoung Min, Seung Jean Kim, Sungroh Yoon · 2010 · Biochemical and Biophysical Research Communications
  33. Insight from the structural molecular model of cytidylate kinase from Mycobacterium tuberculosis
    Nitin Kumar Verma, Balwinder Singh · 2013 · Bioinformation
  34. Old drug new tricks: Chlorhexidine acts as a potential allosteric inhibitor toward PAK1
    Han-wei Huang, Xiang-yu Zhang, Peilu Song, Hailun Jiang, Wei Li, Pengliang Wang, Jian Wang, Funan Liu · 2017 · Biochemical and Biophysical Research Communications
  35. Using the Tools and Resources of the RCSB Protein Data Bank
    Shuchismita Dutta, Kyle Burkhardt, Wolfgang F. Bluhm, Helen Miriam Berman · 2005 · Current Protocols in Bioinformatics
  36. Predicting Potential Allergenicity of New proteins Introduced by Biotechnology
    T. C. Velickovic, M. Gavrović-Jankulović · 2014 · Springer eBooks
  37. Computing motif correlations in proteins
    Jorng‐Tzong Horng, Hsien‐Da Huang, Shih‐Hsien Wang, Ming‐You Chen, Shir‐Ly Huang, Jenn‐Kang Hwang · 2003 · Journal of Computational Chemistry
  38. Role of sequence evolution and conformational dynamics in the substrate specificity and oligomerization mode of thymidylate kinases
    Ansuman Biswas, Subbarao Jasti, Jeyaraman Jeyakanthan, K. Sekar · 2016 · Journal of Biomolecular Structure and Dynamics
  39. Structure-Based Drug Discovery
    Shreya Satyanarayan Bhat, Vidya Niranjan, Spoorti Anil Bandikatte, Soumya Govindappa, Adarsh Vishal · 2025 · IGI Global eBooks
  40. Bioinformatics Resources for Interpreting Proteomics Mass Spectrometry Data
    Iulia M. Lazar · 2017 · Methods in molecular biology
  41. Problems of Protein Three-Dimensional Structures
    Roman Aleksander Laskowski, Ganesh Jawahar Swaminathan · 2007 · Elsevier eBooks
  42. Molecular Modeling and Drug Design Techniques in Microbial Drug Discovery
    Chandrabose Selvaraj · 2019 · Springer eBooks
  43. ΔB/sup +/ tree: indexing 3D point sets for pattern discovery
    Xiong Wang · 2003 · Proceedings
  44. Competing Roles of Ca2+ and Nonmuscle Myosin IIA on the Dynamics of the Metastasis-Associated Protein S100A4
    Ahmet Yıldırım, Mustafa Tekpinar, Tsjerk A. Wassenaar · 2021 · The Journal of Physical Chemistry B
  45. Scientific publications and databases
    Joo Chuan Tong, Shoba Ranganathan · 2013 · Elsevier eBooks
  46. SEMEDA (Semantic Meta-Database) : ontology based semantic integration of biological databases
    Jacob Köhler · 2003 · PUB – Publications at Bielefeld University (Bielefeld University)
  47. THE EXTENSION, APPLICATION, AND GENERALIZATION OF A PHAGE T7 INTRACELLULAR GROWTH MODEL
    Lingchong You · 2002
  48. Structure-Function Studies of Human Cytosolic Thymidine Kinase
    Dvora Berenstein · 2009 · RUCforsk (Roskilde University)
  49. Retrieval and Validation of Structural Information
    Gerard J. Kleywegt, Henrik Hansson · 2005 · CRC Press eBooks
  50. Homology modeling and consensus protein disorder prediction of human filamin
    Suresh Kumar · 2011 · Bioinformation
  51. Simplification, estimation and classification of geometric objects
    Nabil H. Mustafa, Pankaj K. Agarwal · 2004
  52. Design and use of the biomolecular interaction network database (bind) for storing and analyzing protein-protein interaction data
    Christopher W.V. Hogue, Gary D. Bader · 2003
  53. Statistical techniques for biological motif discovery
    Uri Keich, Niranjan Nagarajan · 2007
  54. Genomics Perspectives of Bioethanol Producing Zymomonas Mobilis
    S. Sheik Asraf, K.N. Rajnish, P. Gunasekaran · 2012 · Advances in electronic government, digital divide, and regional development book series
  55. Presence/Absence of Two Types of Z-DNA Binding Domains in the Genomes of Organisms from Archaea, Bacteria, and Eukaryotes and Its Implications
    Hiroshi Nakashima · 2019 · Journal of Biomedical Science and Engineering
  56. Brownian dynamics simulations of the interactions between lactate dehydrogenase (LDH) and G- or F-actin. Part II: mixed isoforms
    Eric N. Njabon, Neville Y. Forlemu, Alphonse Emadak, Victor F. Waingeh, Kathryn A. Thomasson · 2021 · Chemical Papers
  57. Database exploration: Selection and analysis of target protein structures
    Om Silakari, Pankaj Kumar Singh · 2021 · Elsevier eBooks
  58. Genomics Perspectives of Bioethanol Producing Zymomonas Mobilis
    S. Sheik Asraf, Rajnish Narayanan, P. Gunasekaran · 2013 · IGI Global eBooks
  59. Protein Ontology Instance Store
    Amandeep Singh Sidhu, Tharam Singh Dillon, Elizabeth J. Chang · 2007 · Springer eBooks
  60. Microbial Biocatalysis Databases
    Lawrence P. Wackett, Lynda B.M. Ellis · 1999 · Encyclopedia of Bioprocess Technology
  61. Biological Database Integration
    Zina Ben Miled, Yang Liu, Nianhua Li, Omran A. Bukhres · 2006 · Wiley Encyclopedia of Biomedical Engineering
  62. Automatic screening for groups of orthologous genes in comparative genomics using multiple-component clustering
    Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik · 2004
  63. SCOPExplorer: A Tool for Browsing and Analyzing Structural Classification of Proteins (SCOP) Data
    Geon-Tae Ahn, Jin‐Hong Kim, Eui-Yoon Hwang, Myung-Joon Lee, In‐Seob Han · 2004 · Molecules and Cells
  64. Análise do transcriptoma de Podalia orsilochus (Cramer, 1775).
    Luciana Moreira Martins · 2016
  65. Plat: A Web Based Protein Local Alignment Tool
    Stephen Jaegle · 2017
  66. Protein Structure
    Jonathan Pevsner · 2009
  67. Reliable Identification of Homodimers Using AlphaFold
    Danielsson, Sarah Narrowe, Elofsson, Arne · 2025
  68. Algorithms for String Searching on A Beowulf Cluster
    Kishore Ramakrishna Kattamuri · 2003
  69. Biological Data Integration and Model Building
    James A. Eddy, Nathan D. Price · 2013 · Springer eBooks
  70. Design and implementation of an XML Repository System supporting Document Version
    Chung Beom Son · 2003 · The KIPS Transactions PartD
  71. Studies of enzymes from two protease families: Tissue Kallikreins, ADAMs and MMPs.
    Sergio Manzetti · 2005
  72. Common Objects: Think Global, Act Local
    Christian J. Stoeckert · 2003 · OMICS A Journal of Integrative Biology
  73. A multi-level biomedical ontology-enabled broker: dynamic service-based data source integration
    Ramez A. Elmasri, Sheng-Chieh Jack Fu · 2008
  74. Design and evaluation of CATPA
    Mehmet M Dalkilic, Arijit Sengupta · 2005 · ACM Symposium on Applied Computing
  75. Using Chemical Crosslinking and Mass Spectrometry for Protein Model Validation and Fold Recognition
    Esther Mak · 2006
  76. Accomplishments and Challenges of Protein Ontology
    Amandeep Singh Sidhu, Tharam Singh Dillon, Farookh Khadeer Hussain · 2006 · IEEE Annual International Computer Software and Applications Conference (COMPSAC)
  77. Macromolecular crystallography and structural biology databases a NIST
    Gary L. Gilliland · 2001 · Journal of Research of the National Institute of Standards and Technology
  78. Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns
    Melissa R. Landon, David R. Lancia, Karl H. Clodfelter, Sándor Vajda · 2005 · Journal of Molecular Graphics and Modelling
  79. Current Trends in Biomedical Data and Applications
    Amandeep Singh Sidhu, M. Bellgard, Tharam Singh Dillon · 2009 · Studies in computational intelligence
  80. Use of Protein Ontology to Enable Data Exchange for Complex Proteomic Experiments
    Amandeep Singh Sidhu, Tharam Singh Dillon, Elizabeth J. Chang · 2008 · Proceedings - IEEE Symposium on Computer-Based Medical Systems
  81. The PIR for Functional Genomics and Proteomics
    Cathy H. Wu · 2003 · Humana Press eBooks
  82. Problems of Protein Three-Dimensional Structures
    Roman Aleksander Laskowski, Ganesh Jawahar Swaminathan · 2013 · Elsevier eBooks
  83. In Silico Characterization of Proteins InterPro and Proteome Analysis
    Nicola Mulder, Manuela Pruess, Rolf Apweiler · 2005 · Humana Press eBooks
  84. Advanced Modelling and Functional Characterization of B2 Bradykinin Receptor
    Muhammad Saad Khan, Sahar Fazal · 2015 · DOAJ (DOAJ: Directory of Open Access Journals)
  85. Biological Data Cleaning
    2017 · CRC Press eBooks
  86. Design and Implementation of High-dimensional Index Structure for the support of Concurrency Control
    Yong Ju Lee · 2003 · The KIPS Transactions PartD
  87. Interactions of HIV-1 proteins with their cellular partners : insights from computational methods
    Võ Cẩm Quy, Paolo Carloni · 2013 · RWTH Publications (RWTH Aachen)
  88. Metabolismo de serina: caracterização de serina hidroximetiltransferase de Trypanosoma cruzi.
    Carlos Gustavo Baptista · 2017 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
  89. Solvatation de systèmes d'intérêt pharmaceutique : apports de la théorie de la fonctionnelle de la densité moléculaire
    Cédric Gageat · 2017 · arXiv (Cornell University)
  90. Bibliography of NIST biosystems and health publications 2001-2005
    Nancy A Allmang, Nancy A Allmang · 2006
  91. Finding Homologs in Amino Acid Sequences Using Network BLAST Searches
    István Ladunga · 2003 · Current Protocols in Bioinformatics
  92. Molecular characterization and computational structure prediction of activin receptor type IIB in aseel and broiler chicken
    P. Guru Vishnu, T. K. Bhattacharya, Bharat Bhushan, T Vijaya Kumar, RUDRA NATH CHATTERJEE, Chandan Paswan, Athe Rajendra Prasad, Devara Divya, K. Dushyanth · 2019 · Research in Veterinary Science
  93. SCOPML and SCOPBrowser
    2003 · The KIPS Transactions PartD
  94. Proteomics
    Stuart M. Brown · 2008
  95. Protein Data Bank ( PDB )
    Eric Martz · 2004 · Dictionary of Bioinformatics and Computational Biology
  96. References
    2004 · Wiley eBooks
  97. Protein
    2004 · Encyclopedic Dictionary of Genetics, Genomics and Proteomics
  98. Biological Data Integration and Model Building
    James A. Eddy, Nathan D. Price · 2009 · Springer eBooks
  99. A Mini Review of Newly Identified Omicron Sublineages
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  100. Mechanistic insights into mutation in the proton-coupled folate transporter (SLC46A1) causing hereditary folate malabsorption
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