The DOI matches its Crossref record; 13 of the 13 references it cites were found in a registry or an index.
The Protein Data Bank: unifying the archive
Open accessAbstract
The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the progress that has been made in validating all data in the PDB archive and in releasing a uniform archive for the community. We have now produced a collection of mmCIF data files for the PDB archive (ftp://beta.rcsb.org/pub/pdb/uniformity/data/mmCIF/). A utility application that converts the mmCIF data files to the PDB format (called CIFTr) has also been released to provide support for existing software.
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Cites
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Self-citationThe PDB data uniformity project
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Berman, H. M., Battistuz, T., Bhat, T. N., Bluhm, W. F., Bourne, P. E., Burkhardt, K., Feng, Z., Gilliland, G. L., Iype, L. E., Jain, S. C., et al. (2002) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444902003451 · Cited by 2,635
Self-citationSTRING 8--a global view on proteins and their functional interactions in 630 organisms
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The Database of Interacting Proteins: 2004 update
Salwinski, L. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh086 · Cited by 2,271
PISCES: a protein sequence culling server
Wang, G., & Dunbrack, R. L. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg224 · Cited by 1,664
Burley, S. K., Bhikadiya, C., Bi, C., Bittrich, S., Chen, L., Crichlow, G. V., Christie, C. H., Dalenberg, K., Di Costanzo, L., Duarte, J. M., et al. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkaa1038 · Cited by 1,581
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Metadata
- Authors
- Westbrook, J.
- Affiliations
- Rutgers, The State University of New Jersey (US)
- Corresponding author
- Westbrook, J.
- ORCID
- Westbrook, J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-01-01
- Volume
- 30
- Issue
- 1
- Pages
- 245-248
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC99110
- OpenAlex
- W2147809382
- Cited by
- 309
- References
- 13
- Citations by year
- 2026: 6 · 2025: 11 · 2024: 3 · 2023: 6 · 2022: 8 · 2021: 13 · 2020: 6 · 2019: 9 · 2018: 8 · 2017: 13 · 2016: 10 · 2015: 4 · 2014: 9 · 2013: 8 · 2012: 8
- FWCI
- 27.77
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Nucleic Acids Research (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Rutgers University Community Repository (Rutgers University) (submittedVersion)
- Funders
- National Science Foundation
- U.S. Department of Energy
- Universität zu Köln
- National Institutes of Health
- National Institute of General Medical Sciences
- U.S. National Library of Medicine
- Biological and Environmental Research
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Physical Sciences › Computer Science › Information Systems › Research Data Management Practices
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- Protein Data Bank, biological macromolecules, mmCIF, data validation, data format conversion
- MeSH terms
- Amino Acid Sequence, Animals, Archives, Database Management Systems, Enzymes, Forecasting, Ligands, Terminology as Topic, Polymers, Protein Conformation, Proteins, Quality Control, Stereoisomerism, User-Computer Interface, Information Storage and Retrieval, Internet, Databases, Protein
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