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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
Open accessAbstract
PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented with an increasing number of in silico predicted data. Apart from a general description for specific transcription factor sites, levels of confidence for the experimental evidence, functional information and the position on the promoter are given as well. New features have been implemented to search for plant cis-acting regulatory elements in a query sequence. Furthermore, links are now provided to a new clustering and motif search method to investigate clusters of co-expressed genes. New regulatory elements can be sent automatically and will be added to the database after curation. The PlantCARE relational database is available via the World Wide Web at http://sphinx.rug.ac.be:8080/PlantCARE/.
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Cites
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Cited by
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa
Zhou, L., Liu, Y., Liu, Z., Kong, D., Duan, M., & Luo, L. (2010) · Journal of Experimental Botany · doi:10.1093/jxb/erq237 · Cited by 659
Zhu, Y., Wu, N., Song, W., Yin, G., Qin, Y., Yan, Y., & Hu, Y. (2014) · BMC Plant Biology · doi:10.1186/1471-2229-14-93 · Cited by 310
Liu, Z., & Adams, K. L. (2007) · Current Biology · doi:10.1016/j.cub.2007.08.030 · Cited by 156
Xiao, Q., Wang, Y., Du, J., Li, H., Wei, B., Wang, Y., Li, Y., Yu, G., Liu, H., Zhang, J., et al. (2017) · The FEBS Journal · doi:10.1111/febs.14179 · Cited by 86
Al Abdallat, A. M., Ayad, J. Y., Abu Elenein, J. M., Al Ajlouni, Z., & Harwood, W. A. (2014) · Molecular Breeding · doi:10.1007/s11032-013-9958-1 · Cited by 64
Metadata
- Authors
- Lescot, M.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-01-01
- Volume
- 30
- Issue
- 1
- Pages
- 325-327
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2035908878
- Cited by
- 8,132
- References
- 1
- FWCI
- 39.66
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Lescot, M. (2002). PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research. https://doi.org/10.1093/nar/30.1.325
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