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MIPS Arabidopsisthaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome
Open accessAbstract
Arabidopsis thaliana is the first plant for which the complete genome has been sequenced and published. Annotation of complex eukaryotic genomes requires more than the assignment of genetic elements to the sequence. Besides completing the list of genes, we need to discover their cellular roles, their regulation and their interactions in order to understand the workings of the whole plant. The MIPS Arabidopsis thaliana Database (MAtDB; http://mips.gsf.de/proj/thal/db) started out as a repository for genome sequence data in the European Scientists Sequencing Arabidopsis (ESSA) project and the Arabidopsis Genome Initiative. Our aim is to transform MAtDB into an integrated biological knowledge resource by integrating diverse data, tools, query and visualization capabilities and by creating a comprehensive resource for Arabidopsis as a reference model for other species, including crop plants.
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Citations
Cited by
Cannon, S. B., Mitra, A., Baumgarten, A., Young, N. D., & May, G. (2004) · BMC Plant Biology · doi:10.1186/1471-2229-4-10 · Cited by 2,372
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]
Blanc, G., & Wolfe, K. H. (2004) · The Plant Cell · doi:10.1105/tpc.021410 · Cited by 1,076
MIPS: a database for genomes and protein sequences
Mewes, H. W. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.31 · Cited by 786
Nakabayashi, K., Okamoto, M., Koshiba, T., Kamiya, Y., & Nambara, E. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02337.x · Cited by 560
SUBA: the Arabidopsis Subcellular Database
Heazlewood, J. L., Verboom, R. E., Tonti-Filippini, J., Small, I., & Millar, A. H. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkl863 · Cited by 428
Metadata
- Authors
- Schoof, H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-01-01
- Volume
- 30
- Issue
- 1
- Pages
- 91-93
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2109553072
- Cited by
- 180
- References
- 0
- FWCI
- 9.50
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Schoof, H. (2002). MIPS Arabidopsisthaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Research. https://doi.org/10.1093/nar/30.1.91
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
