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Cited by 486

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NetAffx: Affymetrix probesets and annotations

Open access
Liu, G.·2003·Nucleic Acids Research

Abstract

NetAffx (http://www.affymetrix.com) details and annotates probesets on Affymetrix GeneChip microarrays. These annotations include (i) static information specific to the probeset composition; (ii) sequence annotations extracted from public databases; and (iii) protein sequence-level annotations derived from public domain programs, as well as libraries of hidden Markov models (HMMs) developed at Affymetrix. For each probeset, NetAffx lists the probe sequences, and the consensus sequence interrogated by the probes; for the larger chip sets, interactive maps display this sequence data in genomic context. Sequence annotations include Gene Ontology (GO) terms and depiction of GO graph relationships; predicted protein domains and motifs; orthologous sequences; links to relevant pathways; and links to public databases including UniGene, LocusLink, SWISS-PROT and OMIM.

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Metadata

Authors
Liu, G.
Venue
Nucleic Acids Research
Published
2003-01-01
Volume
31
Issue
1
Pages
82-86
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2148911704
Cited by
486
References
1
FWCI
24.88
Type
journal article
Language
en
Open access
green

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CoChat. (2026). Citation check: NetAffx: Affymetrix probesets and annotations. https://app.cochat.ai/papers/10.1093/nar/gkg121
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Liu, G. (2003). NetAffx: Affymetrix probesets and annotations. Nucleic Acids Research. https://doi.org/10.1093/nar/gkg121

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