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Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN
Open accessAbstract
In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).
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Citations
Cites
Fast algorithms for large-scale genome alignment and comparison
Delcher, A. L. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.11.2478 · Cited by 1,036
Cited by
Zhang, Y., Bertolino, A., Fazio, L., Blasi, G., Rampino, A., Romano, R., Lee, M.-L. T., Xiao, T., Papp, A., Wang, D., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0707106104 · Cited by 423
Intersection of population variation and autoimmunity genetics in human T cell activation
Ye, C. J., Feng, T., Kwon, H.-K., Raj, T., Wilson, M. T., Asinovski, N., McCabe, C., Lee, M. H., Frohlich, I., Paik, H.-I., et al. (2014) · Science · doi:10.1126/science.1254665 · Cited by 236
Sarachana, T., Xu, M., Wu, R.-C., & Hu, V. W. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017116 · Cited by 227
Stow, L. R., Richards, J., Cheng, K.-Y., Lynch, I. J., Jeffers, L. A., Greenlee, M. M., Cain, B. D., Wingo, C. S., & Gumz, M. L. (2012) · Hypertension · doi:10.1161/hypertensionaha.112.190892 · Cited by 146
HCK is a survival determinant transactivated by mutated MYD88, and a direct target of ibrutinib
Yang, G., Buhrlage, S. J., Tan, L., Liu, X., Chen, J., Xu, L., Tsakmaklis, N., Chen, J. G., Patterson, C. J., Brown, J. R., et al. (2016) · Blood · doi:10.1182/blood-2016-01-695098 · Cited by 135
Metadata
- Authors
- Farre, D.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-07-01
- Volume
- 31
- Issue
- 13
- Pages
- 3651-3653
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2075363163
- Cited by
- 1,036
- References
- 1
- FWCI
- 1.07
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Farre, D. (2003). Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN. Nucleic Acids Research. https://doi.org/10.1093/nar/gkg605
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