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RPG: the Ribosomal Protein Gene database
Open accessAbstract
RPG (http://ribosome.miyazaki-med.ac.jp/) is a new database that provides detailed information about ribosomal protein (RP) genes. It contains data from humans and other organisms, including Drosophila melanogaster, Caenorhabditis elegans, Saccharo myces cerevisiae, Methanococcus jannaschii and Escherichia coli. Users can search the database by gene name and organism. Each record includes sequences (genomic, cDNA and amino acid sequences), intron/exon structures, genomic locations and information about orthologs. In addition, users can view and compare the gene structures of the above organisms and make multiple amino acid sequence alignments. RPG also provides information on small nucleolar RNAs (snoRNAs) that are encoded in the introns of RP genes.
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Cited by
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Neafsey, D. E., Waterhouse, R. M., Abai, M. R., Aganezov, S. S., Alekseyev, M. A., Allen, J. E., Amon, J., Arcà, B., Arensburger, P., Artemov, G., et al. (2015) · Science · doi:10.1126/science.1258522 · Cited by 578
The ribosomal protein genes and Minute loci of Drosophila melanogaster
Marygold, S. J., Roote, J., Reuter, G., Lambertsson, A., Ashburner, M., Millburn, G. H., Harrison, P. M., Yu, Z., Kenmochi, N., Kaufman, T. C., et al. (2007) · Genome Biology · doi:10.1186/gb-2007-8-10-r216 · Cited by 385
Synonymous Codon Usage in Escherichia coli: Selection for Translational Accuracy
Stoletzki, N., & Eyre-Walker, A. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl166 · Cited by 339
Andrews, T. S., Atif, J., Liu, J. C., Perciani, C. T., Ma, X., Thoeni, C., Slyper, M., Eraslan, G., Segerstolpe, A., Manuel, J., et al. (2022) · Hepatology Communications · doi:10.1002/hep4.1854 · Cited by 307
Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi
Neumüller, R. A., Richter, C., Fischer, A., Novatchkova, M., Neumüller, K. G., & Knoblich, J. A. (2011) · Cell Stem Cell · doi:10.1016/j.stem.2011.02.022 · Cited by 255
Metadata
- Authors
- Nakao, A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-01-01
- Volume
- 32
- Issue
- 90001
- Pages
- 168D-170
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2036726333
- Cited by
- 178
- References
- 0
- FWCI
- 1.18
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Nakao, A. (2004). RPG: the Ribosomal Protein Gene database. Nucleic Acids Research. https://doi.org/10.1093/nar/gkh004
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
