The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
Open accessAbstract
The Protein Data Bank (PDB) is the central worldwide repository for three-dimensional (3D) structure data of biological macromolecules. The Research Collaboratory for Structural Bioinformatics (RCSB) has completely redesigned its resource for the distribution and query of 3D structure data. The re-engineered site is currently in public beta test at http://pdbbeta.rcsb.org. The new site expands the functionality of the existing site by providing structure data in greater detail and uniformity, improved query and enhanced analysis tools. A new key feature is the integration and searchability of data from over 20 other sources covering genomic, proteomic and disease relationships. The current capabilities of the re-engineered site, which will become the RCSB production site at http://www.pdb.org in late 2005, are described.
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Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
The Protein Data Bank: unifying the archive
Westbrook, J. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.245 · Cited by 309
TargetDB: a target registration database for structural genomics projects
Chen, L., Oughtred, R., Berman, H. M., & Westbrook, J. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth300 · Cited by 176
Cited by
The UCSC Genome Browser Database: update 2006
Hinrichs, A. S. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj144 · Cited by 1,646
SuperTarget and Matador: resources for exploring drug-target relationships
Gunther, S., Kuhn, M., Dunkel, M., Campillos, M., Senger, C., Petsalaki, E., Ahmed, J., Urdiales, E. G., Gewiess, A., Jensen, L. J., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm862 · Cited by 647
“In a last step, relations from other databases, namely DrugBank (3), KEGG (9), PDB (10), SuperLigands (11) and TTD (4), were checked for drug-target interactions not identified with the preceding steps.”
BackgroundInfluentialComparative modeling for protein structure prediction
Ginalski, K. (2006) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2006.02.003 · Cited by 296
Modeling the structure of the StART domains of MLN64 and StAR proteins in complex with cholesterol
Murcia, M., Faráldo-Gómez, J. D., Maxfield, F. R., & Roux, B. (2006) · Journal of Lipid Research · doi:10.1194/jlr.m600232-jlr200 · Cited by 111
Identification of discontinuous antigenic determinants on proteins based on shape complementarities
Rapberger, R., Lukas, A., & Mayer, B. (2007) · Journal of Molecular Recognition · doi:10.1002/jmr.819 · Cited by 31
ProtChemSI: a network of protein-chemical structural interactions
Kalinina, O. V., Wichmann, O., Apic, G., & Russell, R. B. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1049 · Cited by 14
Metadata
- Authors
- Deshpande, N.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-12-17
- Volume
- 33
- Issue
- Database issue
- Pages
- D233-D237
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2166458835
- Cited by
- 340
- References
- 3
- FWCI
- 25.20
- Type
- journal article
- Language
- en
- Open access
- hybrid
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