The DOI matches its Crossref record; 14 of the 14 references it cites were found in a registry or an index.
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
Open accessAbstract
The task of gene identification frequently confronting researchers working with both novel and well studied genomes can be conveniently and reliably solved with the help of the GeneMark web software (http://opal.biology.gatech.edu/GeneMark/). The website provides interfaces to the GeneMark family of programs designed and tuned for gene prediction in prokaryotic, eukaryotic and viral genomic sequences. Currently, the server allows the analysis of nearly 200 prokaryotic and >10 eukaryotic genomes using species-specific versions of the software and pre-computed gene models. In addition, genes in prokaryotic sequences from novel genomes can be identified using models derived on the spot upon sequence submission, either by a relatively simple heuristic approach or by the full-fledged self-training program GeneMarkS. A database of reannotations of >1000 viral genomes by the GeneMarkS program is also available from the web site. The GeneMark website is frequently updated to provide the latest versions of the software and gene models.
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Basic local alignment search tool
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tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Lowe, T. M., & Eddy, S. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.5.955 · Cited by 10,905
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )
Yu, J., Hu, S., Wang, J., Wong, G. K.-S., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. (2002) · Science · doi:10.1126/science.1068037 · Cited by 4,208
Besemer, J. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.12.2607 · Cited by 2,351
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Self-citationGeneMark.hmm: new solutions for gene finding
Lukashin, A. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.4.1107 · Cited by 1,538
GENMARK: Parallel gene recognition for both DNA strands
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Heuristic approach to deriving models for gene finding
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Cited by
Zoetendal, E. G., Raes, J., van den Bogert, B., Arumugam, M., Booijink, C. C. G. M., Troost, F. J., Bork, P., Wels, M., de Vos, W. M., & Kleerebezem, M. (2012) · The ISME Journal · doi:10.1038/ismej.2011.212 · Cited by 722
Nowack, E. C. M., Melkonian, M., & Glöckner, G. (2008) · Current Biology · doi:10.1016/j.cub.2008.02.051 · Cited by 329
Dumas, E., Christina Boritsch, E., Vandenbogaert, M., Rodríguez de la Vega, R. C., Thiberge, J.-M., Caro, V., Gaillard, J.-L., Heym, B., Girard-Misguich, F., Brosch, R., et al. (2016) · Genome Biology and Evolution · doi:10.1093/gbe/evw001 · Cited by 112
Pervasive translation in Mycobacterium tuberculosis
Smith, C., Canestrari, J. G., Wang, A. J., Champion, M. M., Derbyshire, K. M., Gray, T. A., & Wade, J. T. (2022) · eLife · doi:10.7554/elife.73980 · Cited by 71
Yang, C., Lin, F., Li, Q., Li, T., & Zhao, J. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00394 · Cited by 44
Metadata
- Authors
- Besemer, J., & Borodovsky, M.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2005-07-01
- Volume
- 33
- Issue
- Web Server
- Pages
- W451-W454
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1978164115
- Cited by
- 1,163
- References
- 14
- FWCI
- 5.30
- Type
- journal article
- Language
- en
- Open access
- gold
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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