The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome
Open accessAbstract
The Escherichia coli chromosome is condensed into an ill-defined structure known as the nucleoid. Nucleoid-associated DNA-binding proteins are involved in maintaining this structure and in mediating chromosome compaction. We have exploited chromatin immunoprecipitation and high-density microarrays to study the binding of three such proteins, FIS, H-NS and IHF, across the E.coli genome in vivo. Our results show that the distribution of these proteins is biased to intergenic parts of the genome, and that the binding profiles overlap. Hence some targets are associated with combinations of bound FIS, H-NS and IHF. In addition, many regions associated with FIS and H-NS are also associated with RNA polymerase.
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Citations
Cites
Interaction network containing conserved and essential protein complexes in Escherichia coli
Butland, G., Peregrín-Alvarez, J. M., Li, J., Yang, W., Yang, X., Canadien, V., Starostine, A., Richards, D., Beattie, B., Krogan, N., et al. (2005) · Nature · doi:10.1038/nature03239 · Cited by 1,201
rRNA Transcription in Escherichia coli
Paul, B. J., Ross, W., Gaal, T., & Gourse, R. L. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.091347 · Cited by 336
Spurio, R., Dürrenberger, M., Falconi, M., La Teana, A., Pon, C. L., & Gualerzi, C. O. (1992) · Molecular and General Genetics MGG · doi:10.1007/bf00279792 · Cited by 163
Cited by
Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression
Browning, D. F., Grainger, D. C., & Busby, S. J. (2010) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.09.013 · Cited by 310
Self-citationProtein occupancy landscape of a bacterial genome
Vora, T., Hottes, A. K., & Tavazoie, S. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.06.035 · Cited by 126
Crozat, E., Winkworth, C., Gaffe, J., Hallin, P. F., Riley, M. A., Lenski, R. E., & Schneider, D. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq099 · Cited by 62
Shen, B. A., Hustmyer, C. M., Roston, D., Wolfe, M. B., & Landick, R. (2022) · iScience · doi:10.1016/j.isci.2022.104429 · Cited by 20
Metadata
- Authors
- Grainger, D. C., Hurd, D., Goldberg, M. D., & Busby, S. J. W.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-09
- Volume
- 34
- Issue
- 16
- Pages
- 4642-4652
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2152763121
- Cited by
- 296
- References
- 3
- FWCI
- 13.61
- Type
- journal article
- Language
- en
- Open access
- gold
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- Grainger, D. C., Hurd, D., Goldberg, M. D., & Busby, S. J. W. (2006). Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Research. https://doi.org/10.1093/nar/gkl542
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