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PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification

Open access
Spandidos, Athanasia, Wang, Xiaowei, Wang, Huajun, Seed, Brian·2010·Nucleic Acids Research

Abstract

PrimerBank (http://pga.mgh.harvard.edu/primerbank/) is a public resource for the retrieval of human and mouse primer pairs for gene expression analysis by PCR and Quantitative PCR (QPCR). A total of 306,800 primers covering most known human and mouse genes can be accessed from the PrimerBank database, together with information on these primers such as T(m), location on the transcript and amplicon size. For each gene, at least one primer pair has been designed and in many cases alternative primer pairs exist. Primers have been designed to work under the same PCR conditions, thus facilitating high-throughput QPCR. There are several ways to search for primers for the gene(s) of interest, such as by: GenBank accession number, NCBI protein accession number, NCBI gene ID, PrimerBank ID, NCBI gene symbol or gene description (keyword). In all, 26,855 primer pairs covering most known mouse genes have been experimentally validated by QPCR, agarose gel analysis, sequencing and BLAST, and all validation data can be freely accessed from the PrimerBank web site.

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Metadata

Authors
Spandidos, A., Wang, X., Wang, H., & Seed, B.
Venue
Nucleic Acids Research
Published
2009-11-10
Volume
38
Issue
suppl_1
Pages
D792-D799
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2092288031
Cited by
910
References
4
FWCI
11.64
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification. https://app.cochat.ai/papers/10.1093/nar/gkp1005
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Spandidos, A., Wang, X., Wang, H., & Seed, B. (2010). PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp1005

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